Protein Alignment SkpA and skp1

DIOPT Version :9

• Sequence 1: NP_001033818.1
• Gene: SkpA / 31016
• FlyBaseID: FBgn0025637
• Length: 162
• Species: Drosophila melanogaster
• Sequence 2: NP_595455.1
• Gene: skp1 / 2540917
• PomBaseID: SPBC409.05
• Length: 161
• Species: Schizosaccharomyces pombe
• Alignment Length: 164
• Identity: 93/164 - (56%)
• Similarity: 117/164 - (71%)
• Gaps: 5/164 - (3%)

  Fly     1 MPSIKLQSSDEEIFDTDIQIAKCSGTIKTMLEDCGMEDDENAIVPLPNVNSTILRKVLTWAHYHK 65
            |..|||.|||.|.|..|..||:.|..||.||||.|   :.|..:|||||:|.:|||||.|..:||
pombe     1 MSKIKLISSDNEEFVVDQLIAERSMLIKNMLEDVG---EINVPIPLPNVSSNVLRKVLEWCEHHK 62

  Fly    66 DDPQPTEDDES--KEKRTDDIISWDADFLKVDQGTLFELILAANYLDIKGLLELTCKTVANMIKG 128
            :|.....::||  :.|::.||..||..|:.|||..|||::||:||||||.||:..||||||||:|
pombe    63 NDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRG 127

  Fly   129 KTPEEIRKTFNIKKDFSPAEEEQVRKENEWCEEK 162
            |:||:|||||||..||:|.||||:||||||.|::
pombe   128 KSPEDIRKTFNIPNDFTPEEEEQIRKENEWAEDR 161

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
SkpA	NP_001033818.1	BTB_POZ_SKP1	4..126	CDD:349631	65/123 (53%)
		Skp1	112..159	CDD:396171	34/46 (74%)
skp1	NP_595455.1	SKP1	1..161	CDD:227528	93/162 (57%)
		Skp1	1..110	CDD:214704	55/111 (50%)
		Skp1	84..158	CDD:279768	50/73 (68%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	1	1.000	79	1.000	Domainoid score	I2355
eggNOG	1	0.900	-	-		E1_COG5201
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H38775
Inparanoid	1	1.050	179	1.000	Inparanoid score	I1131
OMA	1	1.010	-	-		QHG54148
OrthoFinder	1	1.000	-	-		FOG0000367
OrthoInspector	1	1.000	-	-		otm47251
orthoMCL	1	0.900	-	-		OOG6_100934
Panther	1	1.100	-	-	LDO	PTHR11165
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1343
SonicParanoid	1	1.000	-	-		X346
TreeFam	1	0.960	-	-
	14	13.860