DRSC/TRiP Functional Genomics Resources

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Protein Alignment SkpA and skr-5

DIOPT Version :10

Sequence 1:NP_477390.1 Gene:SkpA / 31016 FlyBaseID:FBgn0025637 Length:162 Species:Drosophila melanogaster
Sequence 2:NP_507393.1 Gene:skr-5 / 180148 WormBaseID:WBGene00004811 Length:145 Species:Caenorhabditis elegans


Alignment Length:61 Identity:15/61 - (24%)
Similarity:26/61 - (42%) Gaps:13/61 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   291 WTLNRTVRNAAIR-----MMLPKRLRIRFGLHIGIDEQIAMERQDDRTNNNNNVVLPAMAV 346
            |..|.|..|...|     :.||:    .||.:    :.:..:.:..|...|||:|:.|:.:
 Worm   539 WFSNVTATNIVSRFTNHQIKLPE----IFGNY----QLVNYKLEPPRKRTNNNIVVIAIGI 591

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SkpANP_477390.1 BTB_POZ_SKP1 4..126 CDD:349631
Skp1 112..159 CDD:460222
skr-5NP_507393.1 BTB_POZ_SKP1 8..124 CDD:349631
Skp1 110..>141 CDD:460222
Blue background indicates that the domain is not in the aligned region.

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