DRSC/TRiP Functional Genomics Resources

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Protein Alignment SkpA and CG43089

DIOPT Version :9

Sequence 1:NP_001033818.1 Gene:SkpA / 31016 FlyBaseID:FBgn0025637 Length:162 Species:Drosophila melanogaster
Sequence 2:NP_001246606.1 Gene:CG43089 / 12798588 FlyBaseID:FBgn0262535 Length:144 Species:Drosophila melanogaster


Alignment Length:149 Identity:33/149 - (22%)
Similarity:73/149 - (48%) Gaps:30/149 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 SIKLQSSDEEIFDTDIQIAKCSGTIKTMLEDCGMEDDE-----NAIVPLPNVNSTILRKVLTWAH 62
            :|:||::|..|...|::.|.....::.|:    |::.:     :.::|||.|::..||.::.|. 
  Fly     8 AIQLQTNDGVIHTVDMRFALQICPVRNMI----MQERQKNLHTDDVIPLPRVDAKNLRFIIKWW- 67

  Fly    63 YHKDDPQPTEDDESKEKRTDDIISWDADFLK-------VDQGTLFELILAANYLDIKGLLELTCK 120
                        .|.:...:::::.....||       .:...|.::||||:||.::..|.::..
  Fly    68 ------------TSVQNLDENLLTMGKRKLKQLLTAEHANHQFLLQIILAADYLQMEKFLLISTH 120

  Fly   121 TVANMI-KGKTPEEIRKTF 138
            .:|:.: :.::.||||:.|
  Fly   121 LMADALNECESVEEIRRKF 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SkpANP_001033818.1 BTB_POZ_SKP1 4..126 CDD:349631 28/133 (21%)
Skp1 112..159 CDD:396171 7/28 (25%)
CG43089NP_001246606.1 BTB 9..111 CDD:295341 26/118 (22%)
Skp1 95..>139 CDD:279768 13/43 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11165
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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