DRSC/TRiP Functional Genomics Resources

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Protein Alignment SkpA and gcnt3

DIOPT Version :10

Sequence 1:NP_477390.1 Gene:SkpA / 31016 FlyBaseID:FBgn0025637 Length:162 Species:Drosophila melanogaster
Sequence 2:XP_004917977.1 Gene:gcnt3 / 100486486 XenbaseID:XB-GENE-5887146 Length:443 Species:Xenopus tropicalis


Alignment Length:66 Identity:18/66 - (27%)
Similarity:23/66 - (34%) Gaps:33/66 - (50%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 MEDDENAIV---------PLP--------------------NVNSTILRKVLTWAHYHKDDPQPT 71
            :::|.|.||         |||                    .||.|: |..:|||   ||...|.
 Frog   272 LKEDSNNIVLTNTRKKPSPLPVPVFSGNAYIVVTRNFVNALFVNPTV-RSFITWA---KDTYSPD 332

  Fly    72 E 72
            |
 Frog   333 E 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SkpANP_477390.1 BTB_POZ_SKP1 4..126 CDD:349631 18/66 (27%)
Skp1 112..159 CDD:460222
gcnt3XP_004917977.1 Branch 134..404 CDD:452742 18/66 (27%)
Blue background indicates that the domain is not in the aligned region.

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