DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Roc1a and AT5G26640

DIOPT Version :9

Sequence 1:NP_001138143.2 Gene:Roc1a / 31014 FlyBaseID:FBgn0025638 Length:136 Species:Drosophila melanogaster
Sequence 2:NP_850881.1 Gene:AT5G26640 / 832725 AraportID:AT5G26640 Length:62 Species:Arabidopsis thaliana


Alignment Length:42 Identity:9/42 - (21%)
Similarity:19/42 - (45%) Gaps:5/42 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 VALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVA 99
            :|...||...:.|.:||......|.:|:..:     ::|.::
plant     1 MAWGTWDAQDETCGLCRMPFDASCPDCKLPE-----DDCPLS 37

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Roc1aNP_001138143.2 APC11 53..136 CDD:227521 9/42 (21%)
zf-rbx1 53..126 CDD:289448 9/42 (21%)
AT5G26640NP_850881.1 RING_Ubox 10..>36 CDD:388418 6/30 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5194
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1587140at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.