DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Roc1a and lmgA

DIOPT Version :9

Sequence 1:NP_001138143.2 Gene:Roc1a / 31014 FlyBaseID:FBgn0025638 Length:136 Species:Drosophila melanogaster
Sequence 2:NP_001097122.1 Gene:lmgA / 5740853 FlyBaseID:FBgn0250903 Length:85 Species:Drosophila melanogaster


Alignment Length:82 Identity:31/82 - (37%)
Similarity:42/82 - (51%) Gaps:8/82 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 KQWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK 117
            |.|..||.|.|....:||.|||......|.||     :...::|.:.||||:|.||.|||.:||.
  Fly     6 KSWTGVATWRWIANDENCGICRMSFESTCPEC-----ALPGDDCPLVWGVCSHCFHMHCIVKWLN 65

  Fly   118 TRQV---CPLDNREWDF 131
            .:.:   ||:..:.|.|
  Fly    66 LQPLNKQCPMCRQSWKF 82

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Roc1aNP_001138143.2 APC11 53..136 CDD:227521 31/82 (38%)
zf-rbx1 53..126 CDD:289448 29/75 (39%)
lmgANP_001097122.1 RING_Ubox 1..82 CDD:418438 30/80 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463170
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5194
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11210
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.