DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Roc1a and Roc2

DIOPT Version :10

Sequence 1:NP_001138143.2 Gene:Roc1a / 31014 FlyBaseID:FBgn0025638 Length:136 Species:Drosophila melanogaster
Sequence 2:NP_610691.1 Gene:Roc2 / 36246 FlyBaseID:FBgn0044020 Length:113 Species:Drosophila melanogaster


Alignment Length:104 Identity:45/104 - (43%)
Similarity:62/104 - (59%) Gaps:5/104 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 VNECTDGNTSSFPLRR---KQWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASAT--SEEC 96
            |:..||...:..|.:.   |:|||||:|:||:..|.|||||..:||.|:.|||:.....  .::|
  Fly     9 VDRPTDDGDAGKPEKMFTLKKWNAVAMWSWDVECDICAICRVQVMDSCLRCQADNKRDVMGRQDC 73

  Fly    97 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWDFQKYG 135
            .|.||.|||:||..|:|.|:|....|||..:||..|:.|
  Fly    74 VVVWGECNHSFHHCCMSLWVKQNNRCPLCQQEWSIQRMG 112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Roc1aNP_001138143.2 mRING-H2-C3H2C2D_RBX1 68..129 CDD:438148 28/62 (45%)
Roc2NP_610691.1 RING-H2_RBX2 42..106 CDD:438129 28/63 (44%)

Return to query results.
Submit another query.