DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment su(sable) and CPSF4L

DIOPT Version :9

Sequence 1:NP_001284753.1 Gene:su(sable) / 31012 FlyBaseID:FBgn0003575 Length:1325 Species:Drosophila melanogaster
Sequence 2:XP_011523417.1 Gene:CPSF4L / 642843 HGNCID:33632 Length:190 Species:Homo sapiens


Alignment Length:79 Identity:22/79 - (27%)
Similarity:32/79 - (40%) Gaps:24/79 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   308 RRDSGEGGGGGQEKMGGSNRVEPRKLELCKFYLMDCCAKRDKCSYMHK----EFP-CKYYYLGMD 367
            |.|.||                  |:.:||.:|...|.|.|.|.::|:    ..| |.:|....|
Human    80 RHDRGE------------------KMVVCKHWLRGLCKKGDHCKFLHQYDLTRMPECYFYSKFGD 126

  Fly   368 CYAGDDCLFYHGEP 381
            | :..:|.|.|.:|
Human   127 C-SNKECSFLHVKP 139

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(sable)NP_001284753.1 None
CPSF4LXP_011523417.1 YTH1 34..>182 CDD:227416 22/79 (28%)
ZnF_C3H1 85..108 CDD:214632 9/40 (23%)
ZnF_C3H1 141..166 CDD:214632
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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