DRSC/TRiP Functional Genomics Resources

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Protein Alignment su(sable) and zc3h3

DIOPT Version :9

Sequence 1:NP_001284753.1 Gene:su(sable) / 31012 FlyBaseID:FBgn0003575 Length:1325 Species:Drosophila melanogaster
Sequence 2:XP_689680.3 Gene:zc3h3 / 561182 ZFINID:ZDB-GENE-030131-9399 Length:929 Species:Danio rerio


Alignment Length:608 Identity:117/608 - (19%)
Similarity:196/608 - (32%) Gaps:198/608 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   607 SKRET-EANNSNSKSNGLIMVDYTQYLKDAHVSFSG------NDPLDDDRDDDEQLIIDDGNDST 664
            |.|:| ..||..::::|..:..........|:|.||      ||.|             .|::|.
Zfish    72 SWRKTYSLNNKTNRASGSHVFHSAVSHPSLHISTSGATATGSNDGL-------------IGSNSV 123

  Fly   665 AEEDQQPKKAKAPPA-ATH------------ESSTEEAPLPSVFDLP----SFMNNMLGQGSSA- 711
            :.:.||||:.|..|. ::|            |.||:...|.|..:..    |..|......||: 
Zfish   124 SFKKQQPKQTKEKPVPSSHGVQCDTSKEKKSEESTKTTMLLSATEKVHHGCSSTNETTDSTSSSG 188

  Fly   712 --RQLLP----ASATSPN-----------QENAHLPGGDQSTHKSA-PIGGGTSTNVLGRILFGD 758
              |::.|    ::..:|:           |...|||....|..... |.....||.       ..
Zfish   189 SERKIKPTLKSSAVNNPSIPSTVKAAAQLQVKPHLPPSSSSNRTVVIPSAKKDSTT-------AS 246

  Fly   759 KQSDPEARAAFYRDIIRNPFKAHSGDGDVDSSNENSNSNSH--------------SLTPTPTPEP 809
            ..|:.:::|..      :|.|...   .:||:..::.|..|              ::..||.|..
Zfish   247 SASNLQSQATV------SPAKPQV---KLDSTQTHAASPCHKRSQFTWVKSQETVNINSTPKPLT 302

  Fly   810 GSQSP------KPEDHDQDMPELPVIAPALPPTT------------------PSLYVRRSMYD-- 848
            ...||      :.....:.:...|..:|..|.|:                  ||:.:.|....  
Zfish   303 SGSSPGMIFTRRASSSSKRVSRKPNNSPGAPKTSKYTWVSSSCSLSTAGKANPSVKLPRKPLSPK 367

  Fly   849 --FDPVKEQEHGRQELLTEEKEQYQRDTDMRLPFEPMKHYMPATEIDAAIFSHTP-IRWQLHEVT 910
              ..||:..:.|.:.:..|:|  |...|     ..|:|. ..|..:..:..|||. .||      
Zfish   368 SLKAPVRTFQGGMEGIKKEKK--YTTVT-----VTPLKK-SRAGAVTTSHASHTSRYRW------ 418

  Fly   911 IEESSYAQIRASALHKEQRELRDPRMRRILGLPETPDNSGPLGSVPIMGPSSFSVDNIARCATTI 975
              :::.....||......|......:.|     .|.:|:|..|.    ..|:.|.:..|..|.::
Zfish   419 --KAAGQNANASTSSSASRTTHKSTVYR-----WTANNNGQKGE----KGSTLSPNIPATAALSV 472

  Fly   976 ASPDL--ETAVRDSTPSSP------PPSVVNLPS----------MSVPPPSMRVPPPNIQVEKPT 1022
            .:..|  .|.:...:||:|      .|:|..|.|          ....|.|::...|.:.|    
Zfish   473 GAFKLRSRTKIIRRSPSNPCLERRHSPNVQTLKSRYSLWRRTHTQVKSPTSIKRAQPKVLV---- 533

  Fly  1023 VRTDPRRDPRRAVLQAPTKGASTANTTA-----------------------------PNASGGSK 1058
              :..|...||..|.:.:.|.|.:..::                             |..|...|
Zfish   534 --SFGRHKLRRLSLTSTSLGTSRSGPSSSSVRSPASHRVIKTRYKIDTRRAHAIHHNPALSYRVK 596

  Fly  1059 QISEIRSLLQVSNWYNNLGTNNK 1081
            ::...|:|||     |.:.|.::
Zfish   597 RVHSARALLQ-----NRMRTTSE 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(sable)NP_001284753.1 None
zc3h3XP_689680.3 zf-CCCH 699..720 CDD:279036
ZnF_C3H1 749..774 CDD:214632
ZnF_C3H1 776..802 CDD:214632
zf-CCCH 801..823 CDD:279036
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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