DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment su(sable) and Zc3h3

DIOPT Version :9

Sequence 1:NP_001284753.1 Gene:su(sable) / 31012 FlyBaseID:FBgn0003575 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_001128337.1 Gene:Zc3h3 / 300032 RGDID:1307276 Length:952 Species:Rattus norvegicus


Alignment Length:630 Identity:120/630 - (19%)
Similarity:188/630 - (29%) Gaps:214/630 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 PSTDAVCLQNSNSTKSKKPRPLEDDHASSIELAIANALKKKGIEPPMPRMRSSNQDTSDQSLEGS 133
            ||.|......|||      :||..:...|       |.|.|. ...:.|.|.:.....|:.:..|
  Rat   413 PSGDRPAGVPSNS------KPLFGESQLS-------AYKVKS-RTKIIRRRGNTSLPGDKKISPS 463

  Fly   134 GEGLATANP--LLQSTRSSRRRKRKKEREREQKKDKEQQNRSRRDENDVSVVPGGVEDMDEYEMM 196
            .   ||.|.  |.|..|.:.|.|......:..:|...|.||.|     :..||.....:...|..
  Rat   464 A---ATTNKNHLTQRRRQALRGKSSPILRKTPQKGLMQVNRHR-----LCCVPSSRTHLSSKEAS 520

  Fly   197 NVRGGSPPP-----------------------------------------------------GGA 208
            |.....||.                                                     ||.
  Rat   521 NAHIRIPPSNKVIKTRYRIVKKTPSSSFGAPSFPSSIPSWRARRISLSRSLVLNRLRPTITGGGK 585

  Fly   209 APPLSSCGQRFSGADWDMDDGSAATGAAGLGAGGGGGYNSHSSYDSYSDEETNGPGLMNQR--RR 271
            |||                 ||......|....||..|...::..|   :.::.|...|:.  |.
  Rat   586 APP-----------------GSPRWRNKGYRCIGGVLYKVSANKLS---KTSSRPSDSNRALLRT 630

  Fly   272 TRRDNEKEHQRGVNNRKRRDRDRLEGGLAGSGSKRNRRDSGEGGGGGQEKMGGSNRVE------- 329
            .|.|......|.:.:|      .::..||.....:.:::..........:.|..||.|       
  Rat   631 GRLDPATTSSRSLASR------AIQRSLAIIRQAKQKKEKKREYCMYYNRFGRCNRGECCPYIHD 689

  Fly   330 PRKLELCKFYLMDCCAKRD-KCSYMH----KEFP-CKYYYLGMDCYAGDDCLFYHGEPLSEQLRN 388
            |.|:.:|..::...|.|.| .|.:.|    ::.| |.|:..|: | :..:|      |.|     
  Rat   690 PEKVAVCTRFVRGTCKKTDGSCPFSHHVSKEKMPVCSYFLKGI-C-SNSNC------PYS----- 741

  Fly   389 VLLKHMETAPK-EILGDFKRISRDIAIVQMTRRHEQLCDQLNRENTWNSIGCGLMGKRQDHQMQQ 452
                |:..:.| |:.|||.:....:. .:..::|..||....|...     |          .:.
  Rat   742 ----HVYVSRKAEVCGDFLKGYCPLG-AKCKKKHTLLCPDFARRGV-----C----------PRG 786

  Fly   453 QQQQLQHQQLQQQQEQQQTQQQAAADGGGCIPSLLDMVINPPLSENK-----RKSRWTEKMGAKA 512
            .|.||.|      :.|::..::.||..   ||...|   ..|.|:..     ||...|.:...:.
  Rat   787 TQCQLLH------RNQKRHGRRTAAPP---IPGPSD---GTPRSKASAGHALRKPTTTPRPARQM 839

  Fly   513 AAGAAGSSERDSTSPDAKPLPPHLDLANLSHVLSAENMAKLNKLGITNLEQMLQVPFGQLTEAGL 577
            ::|.|..:|    :|.:.|..|.: ||:.|.:.|....|                          
  Rat   840 SSGLASRTE----APASPPPSPRV-LASTSTLSSKATAA-------------------------- 873

  Fly   578 TLVEIGEIQRKAEDAKPQTQAELESSTPPSKRETEANNSNSKSNG 622
                          :.|.:.....||||...:|...:.:....:|
  Rat   874 --------------SSPSSSPSTGSSTPSLDQEEAVSGTGGAGSG 904

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(sable)NP_001284753.1 None
Zc3h3NP_001128337.1 zf-CCCH 664..690 CDD:279036 4/25 (16%)
ZnF_C3H1 719..744 CDD:214632 9/41 (22%)
ZnF_C3H1 746..772 CDD:214632 6/26 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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