DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment su(sable) and zc3h6

DIOPT Version :9

Sequence 1:NP_001284753.1 Gene:su(sable) / 31012 FlyBaseID:FBgn0003575 Length:1325 Species:Drosophila melanogaster
Sequence 2:NP_001096202.2 Gene:zc3h6 / 100124753 XenbaseID:XB-GENE-6454376 Length:1023 Species:Xenopus tropicalis


Alignment Length:1179 Identity:235/1179 - (19%)
Similarity:366/1179 - (31%) Gaps:481/1179 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 SKKPRPLEDDHASSIELA---------IANALKKKGIEPPMPRMRSSNQDTSDQSLEGSGEGLAT 139
            |:.|.|..|.:.:..|.|         ....::..|||       ...||..:...:|       
 Frog     8 SRPPNPALDKNMTDSEHAGDEREDGELEDGEIEDGGIE-------EQTQDIKEAEDQG------- 58

  Fly   140 ANPLLQSTRSSRRRKRKKEREREQKKDKEQQNRSRRDENDVSVVPGGVEDMDEYEM-MNVRGGSP 203
               :::..|.||:|:||   |||:||:|.::....|..     .||. ::..||.. .:...|..
 Frog    59 ---VVKPHRKSRKRRRK---EREKKKEKRRRREKHRHN-----FPGS-DNSSEYSADSDTEHGER 111

  Fly   204 P-----------------PGG-AAPPLSSCGQRFSGADWDMDDGSAATGAAGLGAGGGGGYNSHS 250
            |                 ||. ..||.:...:..:    |.||.|..:         .|.||...
 Frog   112 PHKDIVYRDYDVQYSQHGPGSYITPPNAKHKKNVN----DYDDYSNYS---------DGNYNEEE 163

  Fly   251 SYDSYSDEETNGPGLMNQRRRTRRDNEKEHQRGVNNRK--RRDRDRLEGGLA---GSGSKRNRRD 310
            ..|.:.::      |.:.|:.....|..|.....||.|  ::.|::.:.|.:   |.|:::..:|
 Frog   164 EEDDFVEQ------LKHYRQAKENSNLAEPPFKKNNIKGNQQGREQQQTGFSYGRGRGNQKKCKD 222

  Fly   311 SGEGGG------------------------------------------------------GGQEK 321
            .|.|.|                                                      |.|.|
 Frog   223 RGRGRGVHKGPNPYFQDGFQEDSKPVKKWVNLSQEFINLHTVEHKGKQICKYFLEKRCIKGDQCK 287

  Fly   322 MGGSNRVEPRKLELCKFYLMDCCAKRDKCSYMHKEFPCKYYYLGMDCYAGDDCLFYHGEPLSEQL 386
            ......: .:|.|:||||:...|.|.|.|.|||.|||||:|:.|..||.||:|.|.| :||::..
 Frog   288 FDHDAEI-GKKREICKFYIQGYCTKGDNCLYMHNEFPCKFYHTGAKCYQGDNCKFSH-DPLTDDT 350

  Fly   387 RNVLLKHMETAPKEILGDFKRISRDIAIVQMTRRHEQLCDQLNRENTWNSIGCGLM---GKRQDH 448
            |.:|.|.:.|  :|:                  :||.       ||     |...|   ||..:.
 Frog   351 RELLHKVLNT--EEV------------------QHED-------EN-----GASEMPRHGKFYNP 383

  Fly   449 QMQQQQQQLQHQQLQQQQEQQQTQQQAAADGGGCIP----SLLDMVIN----------PPLSE-- 497
            .....|.|..||.:...:...::....:...||..|    ::.:.|||          ||..:  
 Frog   384 PYYGMQYQGCHQPMYNSEPLPESGPNVSPMTGGIPPFNASTMQNPVINNQRDGYNLSSPPFLQST 448

  Fly   498 -----------------------------NKRKSRWTEKMGAKAAAGAAGSSERDSTSPDAKPLP 533
                                         |.:....|||  .:....|:.:.:.|....:|..|.
 Frog   449 EEATHTNSYQCSQNTTGFYDNYYSQQAVHNTQSCNTTEK--TQGILFASMNKQPDGVEQNASQLQ 511

  Fly   534 PHL-----DLANLSHVLSAENMAKLNKLGITNLEQMLQVPFGQLTEAGLTLVEIGEIQ------- 586
            ..:     |::|. :..|.|.    :..|:|:|.:.|:      .:|.:..:...|.|       
 Frog   512 RSVSRDEDDISNW-YTSSEEE----DGSGVTSLLKTLR------NQANIARMNSQEQQPLPINCD 565

  Fly   587 -RKAEDAKPQTQAELESSTPPSKRETEANNSNSKSNGL---IMVDYTQYLKDAHVSFSGN----- 642
             |.|:|...:.||     :.|..:.|||.|..:..:..   :|.| .:.||...:|.:.|     
 Frog   566 PRLAKDRALRIQA-----SDPRVKGTEAQNPGNHGDSADRRVMRD-PRKLKSGDISANSNAKTES 624

  Fly   643 -----------DPLDDDRDDDEQ-----------------------------------LIIDDGN 661
                       ..||||.||.|:                                   :::...|
 Frog   625 TQVQSGSKVTQKGLDDDEDDGEKELREKAAIIPLEMLPGVNLRDPRCKLRQFSHIKMDILLTKPN 689

  Fly   662 DST----AEEDQQPKKAKAPPAATHESSTEEAPLPSVFDLPSFMNNMLGQGSSARQLLPASATSP 722
            .:.    |.||..|   ..||...|.||. ..|||.:.               |.|.|..|.:.|
 Frog   690 FAKLIVWAPEDLLP---VPPPKPDHVSSI-NLPLPPLI---------------ADQRLNKSKSLP 735

  Fly   723 NQ--ENAH----------------LPGGDQSTHKSAPIGGGTSTNVLGRILFGDKQSDPEARAAF 769
            |:  ::||                ||..::||.:     ||.:      ::| :|..||..:   
 Frog   736 NEFHQSAHDLRLDPRLETKAKQAVLPARNRSTDQ-----GGLN------VIF-NKLGDPRLQ--- 785

  Fly   770 YRDIIRNPFKAHSGDGDVDSSNENSNSNSHSLTPTPTPEPGSQSPKPEDH------------DQD 822
                 :||            .:....:.||...|..|.:..|....|...            ..|
 Frog   786 -----KNP------------QSRLQRAASHDSQPAITKDHNSSKADPRTAARSASLTASGLCKSD 833

  Fly   823 MPELPVIAPALPPT-----TPSLYVRR-SMYD-----------------FDPVKEQEH---GRQE 861
            ...||..||.|...     |||..::. |:||                 .||.:|.|.   ....
 Frog   834 QNSLPPYAPKLSSPNIRLGTPSSILKNISLYDPRNNETSVAVSDSKPTIKDPKEESEKNLGNPNA 898

  Fly   862 LLTEEKEQYQRDTDMRLPFEPMKHYMPATEIDAAIFSHTPIRWQLHEVTIEESSYAQIRASALHK 926
            |...|.|:....|            .||:..:..:          .:.|.||:            
 Frog   899 LCKSETEKLNSST------------QPASSTEEPV----------QQNTSEET------------ 929

  Fly   927 EQRELRDPRMRRILGLPETPDNSGPLGSVPIMGPSSFSVDNIARCATTIASPDLETAVRDSTPSS 991
            |::.:..|..:.||..|:      |:...|...||:                             
 Frog   930 EEKTVDSPNEKCILDKPQ------PVPDAPEPQPSA----------------------------- 959

  Fly   992 PPPSVVNLP 1000
             .|:|.|||
 Frog   960 -APAVHNLP 967

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(sable)NP_001284753.1 None
zc3h6NP_001096202.2 zf_CCCH_4 272..290 CDD:375772 3/17 (18%)
zf_CCCH_4 301..319 CDD:375772 9/17 (53%)
zf-CCCH_4 323..344 CDD:375512 12/21 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 102 1.000 Domainoid score I6774
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 107 1.000 Inparanoid score I4787
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48153
Panther 1 1.100 - - LDO PTHR13119
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4775
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.180

Return to query results.
Submit another query.