DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vsp37A and vps37c

DIOPT Version :9

Sequence 1:NP_001259101.1 Gene:Vsp37A / 31006 FlyBaseID:FBgn0016038 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_001071253.1 Gene:vps37c / 777738 ZFINID:ZDB-GENE-061110-126 Length:323 Species:Danio rerio


Alignment Length:165 Identity:31/165 - (18%)
Similarity:70/165 - (42%) Gaps:14/165 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 LPNLCTLSLDELKQLDRDPEFFEDFIEEMSVVQYLNEELDSMMDQVEIISRENECKGIHLVELKR 100
            :..|..||..||:.|..:.|..|....|...:|.:..|.:..:.....::.:|       :::|.
Zfish     1 MEKLQDLSQSELQDLLDNLERVESMALESDEIQNIQLEREMALAANRSLAEQN-------LDMKP 58

  Fly   101 RLSDDFTALKNLGEKCDRLNKKYFKK-------SDEYAPQHIRELLQIAASNADGDCDRHVEHFL 158
            |:.:|...|.....:.:.:.:||.:.       ..:.:|:.:...||...::.:.:.:...:.||
Zfish    59 RIENDRARLVEKYTELEAVREKYKQHCVLRDSIMGQVSPEGLLSRLQAEGASTEAESEALADEFL 123

  Fly   159 NGKTDVQTFLNTYQWSKKISTERKAKEERLGTQLS 193
            .|...:.:||..:...:.::..|:.:.|:|...||
Zfish   124 EGSISLDSFLERFLSLRSLAHTRRVRIEKLQEILS 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsp37ANP_001259101.1 Mod_r 42..181 CDD:284587 25/145 (17%)
vps37cNP_001071253.1 Mod_r 5..146 CDD:284587 25/147 (17%)
CENP-H 9..93 CDD:283493 15/90 (17%)
MFMR 210..298 CDD:285072
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3270
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.