DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vsp37A and Vps37a

DIOPT Version :10

Sequence 1:NP_525034.2 Gene:Vsp37A / 31006 FlyBaseID:FBgn0016038 Length:200 Species:Drosophila melanogaster
Sequence 2:NP_001020038.1 Gene:Vps37a / 290775 RGDID:1560016 Length:398 Species:Rattus norvegicus


Alignment Length:199 Identity:52/199 - (26%)
Similarity:95/199 - (47%) Gaps:18/199 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PTTPQDLALAHSLAQRPPTDSSEAKEQEAGES-------DNLPNLCTLSLDELKQLDRDPE-FFE 58
            |..| ...:..||....||..|.|...:.|..       |..|.|..||:.:|..::...| ..|
  Rat   192 PVAP-SFGILSSLPLPVPTTESSASINQNGFGYKMPDIPDAFPELSELSVSQLTDMNEQEEVLLE 255

  Fly    59 DFIEEMSVVQYLNEELDSMMDQVEIISREN---ECKGIHLVELKRR-LSDDFTALKNLGEKCDRL 119
            .|:....:.|.:.::.| ::..:|.::|:|   |    |.:|.||: :.|.:..|..:....::.
  Rat   256 QFLMLPQLKQIITDKED-LVKSIEELARKNLLLE----HSLETKRQAVLDKYELLIQMKSTFEKK 315

  Fly   120 NKKYFKKSDEYAPQHIRELLQIAASNADGDCDRHVEHFLNGKTDVQTFLNTYQWSKKISTERKAK 184
            .::..:.|:..:...::..|::||..|:.:.|...|.||.|||::..|||:::..:.|...|:||
  Rat   316 MQRQHELSESCSASALQARLKVAAHEAEEESDNIAEDFLEGKTEIDDFLNSFKEKRTICHCRRAK 380

  Fly   185 EERL 188
            ||:|
  Rat   381 EEKL 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vsp37ANP_525034.2 Mod_r 42..185 CDD:462117 36/147 (24%)
Vps37aNP_001020038.1 UEV_TSG101-like <54..131 CDD:467408
Mod_r 236..381 CDD:462117 36/149 (24%)
Blue background indicates that the domain is not in the aligned region.

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