DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and HMRA1

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_010021.1 Gene:HMRA1 / 850459 SGDID:S000000694 Length:126 Species:Saccharomyces cerevisiae


Alignment Length:124 Identity:28/124 - (22%)
Similarity:48/124 - (38%) Gaps:46/124 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   479 HALHNN-NNNTTNNNNHSLKAEGINGAGSGHDDSLNEDGIEEDIDDVDDADGSGGGDANGSDGLP 542
            |.||.| :||.....:|..|.:...|..|                                    
Yeast    48 HTLHKNISNNRLEIYHHIKKEKSPKGKSS------------------------------------ 76

  Fly   543 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTK 601
                    :..:|:.: ||:.||:::.|::.|:|.:|....:||.||::||.|.|.::|
Yeast    77 --------ISPQARAF-LEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 18/56 (32%)
HMRA1NP_010021.1 HOX 70..126 CDD:197696 19/100 (19%)

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