DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and HB-2

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_193411.1 Gene:HB-2 / 827384 AraportID:AT4G16780 Length:284 Species:Arabidopsis thaliana


Alignment Length:399 Identity:78/399 - (19%)
Similarity:148/399 - (37%) Gaps:92/399 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 SLCQFQFKLIEIVSQISAYEYIASCV---CFLINVVHILVLTRKSMRTSSINVIMTAVAIFDICS 83
            :|.|.| .|:|:..|  ..|.:.|.:   .|:.::|...::.....|   |.:|.|::.:  :.|
plant    58 ALLQLQ-SLLELTCQ--QQEIVVSALLIGAFVASLVGGSLIDLYGRR---ITIIFTSILL--VFS 114

  Fly    84 YLL-----NFGTL-AVRII-------SSYSKC--FNESSYQ-----MIFLNNCLFFIN------- 121
            .||     ::|:| |.||:       |:.:.|  ..|.|.|     ::.||..:..:.       
plant   115 NLLPVVIVSYGSLIAGRIVIGVSISLSAIATCVYIAEISPQHKRGMLVSLNELMIVVGILFAYIC 179

  Fly   122 --EYARRCSTW-----LLFSVAVIRTLVIR-NPMSPKYAKLSN-SSTALRVIFGVSIICIIFSIN 177
              .:|...:.|     |:..:|.::.:.:. .|.||::..:.. ...|.:|:..:.....|....
plant   180 NYLFASVSNGWKYMFGLIIPLAALQAIAMYFLPQSPRFLIMKGYDDAAGKVLQKLRATTNISEEL 244

  Fly   178 TALENEIEIIDRKPSECNSKGVISYGHVVSKLFWQNDEFLLKI-----STFTTAIVSHIIPCILF 237
            ||:::.|:              ..|.:....||...|...:::     .:|...|...  |.|||
plant   245 TAIKSSIK--------------AEYQYRFLDLFCSRDNMRVRLLIGLTLSFFVQITGQ--PNILF 293

  Fly   238 PIITIILINELRRIDVKRKSSTSSNKAKDSQNRTKLVFYNTI---LFLIAEFPLGFS-MAVTWFF 298
            ...|::.....:..:....:||.....|.......::|.:.|   .||.    :|.: |||:...
plant   294 YASTVLKSVGFQSTEAASLASTGIGVIKVVSTIPAIIFVDKIGSKTFLC----IGSAVMAVSLVS 354

  Fly   299 VDVPGLQLIFSYSQYLFSVVLTINTSSHFVICMLMSSQYRNNAKILIFNVELLKNKKVSISSLSQ 363
            |.:..|||..:::.                ||.:.:.|..:....:|:....|.....|:...:.
plant   355 VGLVSLQLDVNFNN----------------ICKVHTMQNHSLQDSIIYGPLSLSKPNESLFEETS 403

  Fly   364 TASSTHCKY 372
            |..||...|
plant   404 TLESTKASY 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649
HB-2NP_193411.1 HD-ZIP_N 8..107 CDD:461370 13/54 (24%)
HOX 128..182 CDD:197696 10/53 (19%)
HALZ 184..227 CDD:128634 7/42 (17%)
Blue background indicates that the domain is not in the aligned region.

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