DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vnd and nanog

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001091862.1 Gene:nanog / 792333 ZFINID:ZDB-GENE-030131-5486 Length:384 Species:Danio rerio


Alignment Length:397 Identity:85/397 - (21%)
Similarity:124/397 - (31%) Gaps:122/397 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   279 ADHHSTTEHHAPPSHPQQ----QHPHHQQHHHPHLLLPQQHHQQAVAPLPLAHHQSGEAQSHAHA 339
            ||......::..||:...    .:|...:|..|:|..|.                    .::.|:
Zfish     2 ADWKMPVSYNFNPSYHAYAYGLMYPQVSEHGVPNLSWPD--------------------AAYTHS 46

  Fly   340 NAAAAHLLASHNAAAAAAVAAGQYLPNLPKNFPGSFGDEMSSYHHMAQTMLQHSGRSAWIKENEL 404
            ....|....:..|         |..|..|:|     |...|:|.       |:.|.|   :...|
Zfish    47 GGVTAGYFTAQTA---------QSPPWSPEN-----GGASSTYS-------QYPGHS---QNGRL 87

  Fly   405 YGTQQPASPDSTSPVTSEVSYTYIGSNCQTSPALSGDYKSYSRSADSDALSVGDALHTLHGSSGN 469
            :.:.....||                    ..|...:..|....:||:|       ||....|..
Zfish    88 FLSYNKTEPD--------------------QKAKDAEQTSSDTPSDSEA-------HTPDSWSSA 125

  Fly   470 GSAGGAPTAHALHNNNNNTTNNNNHSLKAEGINGAGSGHDDSLNEDGIEEDIDDVDDADGSGGGD 534
            .|..|.|    |.|.|..:..:.::    |..:|:....:.:|.....||.::.....|......
Zfish   126 SSREGVP----LTNLNLPSWRDRDY----ETDSGSPDSGERNLTSTAGEEPVNLNLGVDTQPPLP 182

  Fly   535 ANGSDGL--PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 597
            |..:..:  |...||.|..|::.|...|..||..||||:..|.:.||....||..|||.||||.|
Zfish   183 ALTASPVRPPTLPRKTRAAFSEEQMNALVNRFNVQRYLTPAEMKTLAGATGLTYKQVKTWFQNRR 247

  Fly   598 YKTKRAQNEKGY---------------------EGHPGLLHGHATHPH---------------HP 626
            .|.||.|.:..:                     ...||....|..:|.               :|
Zfish   248 MKLKRHQRDSSWMTERYVVNAVPNTPASQSQFQSEPPGANQDHYINPQVREPVFKRSPPKTPFYP 312

  Fly   627 SALPSPR 633
            | .|.||
Zfish   313 S-YPQPR 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 26/55 (47%)
nanogNP_001091862.1 Homeodomain 196..252 CDD:459649 26/55 (47%)

Return to query results.
Submit another query.