DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and lbx1

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001072559.1 Gene:lbx1 / 780014 XenbaseID:XB-GENE-6455157 Length:265 Species:Xenopus tropicalis


Alignment Length:91 Identity:39/91 - (42%)
Similarity:50/91 - (54%) Gaps:2/91 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   516 GIEEDIDDVDDADGSGGGDANGSDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLAS 580
            |:|..:  :..|:|..|....|....|.|:||.|..||..|.||||:||..|:|||..:|:.:|.
 Frog    98 GLEVSV--LQAAEGRDGMTIFGQRQTPKKRRKSRTAFTNHQIYELEKRFLYQKYLSPADRDQIAQ 160

  Fly   581 LIRLTPTQVKIWFQNHRYKTKRAQNE 606
            .:.||..||..||||.|.|.||...|
 Frog   161 QLGLTNAQVITWFQNRRAKLKRDLEE 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 28/55 (51%)
lbx1NP_001072559.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..33
Homeodomain 126..182 CDD:459649 28/55 (51%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..265
Blue background indicates that the domain is not in the aligned region.

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