Protein Alignment vnd and Nkx3-2

DIOPT Version :10

• Sequence 1: NP_476786.2
• Gene: vnd / 31003
• FlyBaseID: FBgn0261930
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: NP_001386451.1
• Gene: Nkx3-2 / 682329
• RGDID: 1584617
• Length: 328
• Species: Rattus norvegicus
• Alignment Length: 318
• Identity: 91/318 - (28%)
• Similarity: 121/318 - (38%)
• Gaps: 105/318 - (33%)

  Fly   353 AAAAAVAAGQYLPNLPKNFPGSFGDEMSSYHHMAQTMLQHSGR--------SAWIKENE------ 403
            |||.||...:..........|...|.:.:.....:|.:.||..        ||..:|||
  Rat    44 AAAPAVCCWRLFGETEAGALGGAEDSLLASPARTRTAVGHSAESPGGWDSDSALSEENEGRRRCA 108

  Fly   404 -------------LYGTQQPASPDSTSPVTSEVSYTYIGSNCQTSPALSGDYKSYSRSADSDALS 455
                         ..|.:|.|:.|......       |.|:.:.|.::|||
  Rat   109 DVPGASGTGHARVTLGLEQHAAKDLEEEAR-------IRSDSEMSASVSGD-------------- 152

  Fly   456 VGDALHTLHGSSGNGSAGGAPTAHALHNNNNNTTNNNNHSLKAEGINGAGSGHDDSLNEDGIEED 520
                 |:..|..|:.|.|||                     :..|:.|...|...|....|:||:
  Rat   153 -----HSPRGEDGSVSPGGA---------------------RVPGLCGTAGGGASSGQAGGVEEE 191

  Fly   521 IDDVDDADGSGGGDANGSDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLT 585
            .:.....              |.|||. |..|:.||.:||||||..|||||.|||..||:.::||
  Rat   192 EEPAAPK--------------PRKKRS-RAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLT 241

  Fly   586 PTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRN 643
            .|||||||||.||||||.|..      ..||          ::.|:.::|||.||||:
  Rat   242 ETQVKIWFQNRRYKTKRRQMA------ADLL----------ASAPAAKKVAVKVLVRD 283

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vnd	NP_476786.2	Homeodomain	546..602	CDD:459649	36/55 (65%)
Nkx3-2	NP_001386451.1	Homeodomain	202..258	CDD:459649	37/56 (66%)