DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and Barx2

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001414382.1 Gene:Barx2 / 679701 RGDID:1584840 Length:290 Species:Rattus norvegicus


Alignment Length:230 Identity:60/230 - (26%)
Similarity:84/230 - (36%) Gaps:69/230 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   463 LHGSSGNGSAGGAP-----------TAHALHNNNNNTTNNNNHSLKAEGINGAGSGHDDSLNEDG 516
            ||..:|:.|....|           .:|.:......|..|..|::.||....|.:....:..|  
  Rat    58 LHSCTGSPSLRAYPLLSVITRQPTVISHLVPTGPGLTPVNTRHAVAAEAAAAAAAAAAAAAAE-- 120

  Fly   517 IEEDIDDVDDADGSGGGDANGS------DGLPNKK--RKRRVLFTKAQTYELERRFRQQRYLSAP 573
                         :.||:|..|      ...|.:|  |:.|.:||:.|...||::|::|:|||.|
  Rat   121 -------------TPGGEALASSESETEQPTPRQKKPRRSRTIFTELQLMGLEKKFQKQKYLSTP 172

  Fly   574 EREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYE------GHP------------------- 613
            :|..||..:.||..|||.|:||.|.|.|:...:.|.|      |.|                   
  Rat   173 DRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAEEKMNS 237

  Fly   614 --------GLLHG--HATHPHHPSALPSPRRVAVP 638
                    |.|.|  ....|..|.|...|..||.|
  Rat   238 QAQSQEQLGSLQGQEEPRDPQEPKACLVPLEVAEP 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 26/55 (47%)
Barx2NP_001414382.1 None

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