DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and Vax1

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_072158.1 Gene:Vax1 / 64571 RGDID:621132 Length:336 Species:Rattus norvegicus


Alignment Length:295 Identity:77/295 - (26%)
Similarity:111/295 - (37%) Gaps:74/295 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   449 ADSDALSVGDALHTLHGSSGNGSAGGAPTAHALHNNNNNTTNNNNHSLKAE--GINGAGSGHDDS 511
            :|::|..|....|. ......|:.|..|.|.                ||..  ..:.:|:..|.:
  Rat    14 SDTEAARVSKNAHK-ESREIKGAEGSLPAAF----------------LKEPQGAFSASGASEDCN 61

  Fly   512 LNEDGIEEDIDD-----VDDADGS-------GGGDANGSDGLPNKKRKRRVLFTKAQTYELERRF 564
            .::.....|.|.     |.||.||       .|.|.       ::.::.|..||..|.|.||..|
  Rat    62 KSKSNSSADPDYCRRILVRDAKGSIREIILPKGLDL-------DRPKRTRTSFTAEQLYRLEMEF 119

  Fly   565 RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN----------------------EK 607
            ::.:|:...||..||..:.|:.||||:||||.|.|.|:.|.                      |:
  Rat   120 QRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQGKDSELRSVVSETAATCSVLRLLEQ 184

  Fly   608 G-YEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRN-GKPCLGDSSKLGADCVSVSSATATAMQ 670
            | ....|||          |:.||.....|:...:|. ..|.||..:..|:...:.::|||....
  Rat   185 GRLLSPPGL----------PALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAATAPGPA 239

  Fly   671 NAAAHHLVALNGAAAYQHAAAAAAGLHAHAHAHAH 705
            .||:.|..|:.||..  ...|...||||.|...:|
  Rat   240 GAASQHPPAVGGAPG--PGPAGPGGLHAGAPTASH 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 24/55 (44%)
Vax1NP_072158.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..39 6/25 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 50..69 2/18 (11%)
vax upstream domain 72..99 8/33 (24%)
homeobox 100..159 25/58 (43%)
Homeodomain 101..157 CDD:459649 24/55 (44%)
vax downstream domain 178..189 2/10 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 236..267 11/32 (34%)
vax terminal domain 315..323
Blue background indicates that the domain is not in the aligned region.

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