DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and hmx3a

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_571709.3 Gene:hmx3a / 60310 ZFINID:ZDB-GENE-001020-1 Length:297 Species:Danio rerio


Alignment Length:242 Identity:72/242 - (29%)
Similarity:105/242 - (43%) Gaps:58/242 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   477 TAHALH--------NNNNNTTNNNNHS----LKAEGINGAGSGHDDSLNEDGIEEDIDDVDDADG 529
            :|| ||        .:::.||..:..|    ||::  ..|....||  |:.|.|..:::.|..||
Zfish    88 SAH-LHRTEAAQKARDSSPTTGTDRDSPELVLKSD--PDAKDDEDD--NKSGDEIVLEESDTEDG 147

  Fly   530 SGGGDA-------NGSDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPT 587
            ...|..       :|:|..|.:|:|.|.:|:::|.::||..|..:||||:.||..||:.:.||.|
Zfish   148 KKEGSIDDWKKSDDGADKKPCRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTET 212

  Fly   588 QVKIWFQNHRYKTKR---AQNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLG 649
            ||||||||.|.|.||   |:.|             |.:..|.:|   .|.|.||:|....     
Zfish   213 QVKIWFQNRRNKWKRQLAAELE-------------AANLSHAAA---QRIVRVPILYHEN----- 256

  Fly   650 DSSKLGADCVSVSSATATAMQNAAAHHLVALNGAAAYQHAAAAAAGL 696
                      |.|.:|.||.....:..|:.......|.|....:..|
Zfish   257 ----------SASESTNTAGNVPVSQPLLTFPHPVYYSHPIVTSVPL 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 28/55 (51%)
hmx3aNP_571709.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 24..43
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 96..172 19/79 (24%)
Blue background indicates that the domain is not in the aligned region.

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