DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and meox2a

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_017206696.1 Gene:meox2a / 556898 ZFINID:ZDB-GENE-080613-1 Length:302 Species:Danio rerio


Alignment Length:398 Identity:89/398 - (22%)
Similarity:116/398 - (29%) Gaps:165/398 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   219 AAAAAAHHGSDLSHHSASESTSGHRGQGSHTSPSALSPTPAGVSADEHHNGSGTGGGAGEADHHS 283
            |...|.|....|  |...|..|.:....|.:.||...     ||.....:|...||         
Zfish    14 APPQAVHPAFAL--HGRPEHLSSYPDLSSSSPPSTCI-----VSGYPGEDGGLFGG--------- 62

  Fly   284 TTEHHAPPSHPQQQHPHHQQHHHPHLLLPQQHHQQAVAPLPLAHHQSGEAQSHAHANAAAAHLLA 348
               |....|..||||.||..|||    |.||                                  
Zfish    63 ---HQRGLSVSQQQHHHHHHHHH----LAQQ---------------------------------- 86

  Fly   349 SHNAAAAAAVAAGQYLPNLPKNFPGSFGDEMSSYHHMAQTMLQHSGRSAWIKENELYGTQQPASP 413
                       .|.:||......|.:.|..:.         |..||                  |
Zfish    87 -----------GGWHLPQSSSASPSAAGVRLG---------LGISG------------------P 113

  Fly   414 DSTSPVTSEVSYTYIG----SNCQTSPALSGDYKSYSRSADSDALSVGD-ALHTLHGSSGNGSAG 473
            ||.|        :.:|    |.|.::|:|.....|     .:..:..|| ..||:          
Zfish   114 DSGS--------SDVGPGGPSLCASTPSLGAGVPS-----GASCVPGGDFGRHTM---------- 155

  Fly   474 GAPTAHALHNNNNNTTNNNNHSLKAEGINGAGSGHDDSLNEDGIEEDIDDVDDADGSGGGDANGS 538
             :|......|:...:                    |.|.::||                   |..
Zfish   156 -SPAEAEKRNSKRRS--------------------DSSESQDG-------------------NYK 180

  Fly   539 DGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 603
            ..:.:|.||.|..|||.|..|||..|....||:...|..:|..:.||..|||:||||.|.|.||.
Zfish   181 SDVSSKPRKERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRV 245

  Fly   604 QNEKGYEG 611
            :.  |.:|
Zfish   246 KG--GQQG 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 26/55 (47%)
meox2aXP_017206696.1 Homeodomain 188..244 CDD:459649 26/55 (47%)

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