DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vnd and HGTX

DIOPT Version :9

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001368954.1 Gene:HGTX / 53446 FlyBaseID:FBgn0040318 Length:587 Species:Drosophila melanogaster


Alignment Length:632 Identity:135/632 - (21%)
Similarity:198/632 - (31%) Gaps:259/632 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 GSHTSPSALSPTP-AGVSADEHHNGSGTGGGAGEADHHSTTEHHAPPSH---PQQQHPHHQQHHH 306
            |..::||...|.| |.|:|.:.       ..:.:...:|......||:.   |.||||....:.|
  Fly    13 GGSSNPSPTPPPPDAKVAAKQL-------AQSFQLSANSAFNLALPPAFYRAPPQQHPECLDYGH 70

  Fly   307 P----HLLLP-QQHHQQAVA----PLPLA--HH-----QSGEAQSHAHANAAAAH---LLASHNA 352
            .    .|:.| .:||..|.|    |...|  ||     .:|.|..||||.|||.:   |...|:|
  Fly    71 EAPEMDLINPYMRHHSFAAAAQGSPPSAAQRHHLAAAMSNGFADVHAHAMAAADYQQQLADYHSA 135

  Fly   353 AAAAAVAAGQYLPNLPKNFPGSFGDEMSSYHHMAQTMLQHSGRSAWIKENELYGTQQPASPDSTS 417
            ||||||    |..|...|     .:..|:.::.:..||..:.....:|:::        ||.:|.
  Fly   136 AAAAAV----YANNNNNN-----NNNSSNNNNSSPLMLLKAAHGGGLKDSD--------SPSTTP 183

  Fly   418 PVTSEVSYTYIGSNCQTSPALSGDYKSYSRSADSDALS-----VGDALHTLHGSS---------- 467
            |..|    :.:.|:...||....:......||.|.|||     ..|...|...:|          
  Fly   184 PPAS----SRLHSDSSPSPRYEHNSSPGVDSAKSYALSQRSSGAEDPCQTSESASPPPQGQNDYS 244

  Fly   468 -GNGSAGGAPTAH-------ALHNNNN----NTTNNNNH----------------------SLKA 498
             .|.|:..|...|       ||||.|:    ...|||||                      .:|.
  Fly   245 PENLSSQRAKFQHHHGVNPLALHNANHAGNPGCHNNNNHMDHKLPLSFLGPPLAALHSMTTEMKG 309

  Fly   499 EGINGA-----GSGHDDSLNEDGIEEDIDDVDDADGSGGGDAN--------GSDGLPN------- 543
            :|:.|:     |..:..|.|...|.:        .||||..::        .|.|.||       
  Fly   310 QGVGGSSASANGLSYSHSPNSHLISD--------RGSGGSSSSSSTTTTNTNSQGAPNPHGIDTI 366

  Fly   544 ----------------------------------------------------------------- 543
                                                                             
  Fly   367 LSKPPPVTSAGLSALTGAGIPRFSIAAAAAGMAQYLSQSQGAPLKTHAGHIVDRTHLYWPGLQGL 431

  Fly   544 ---------------------------------KKRKRRVLFTKAQTYELERRFRQQRYLSAPER 575
                                             ||:..|..|:..|.:.||:.|.|.:||:.|||
  Fly   432 VANPIAWRERLSNTMSANLSQSHQHHPSNDKDGKKKHTRPTFSGQQIFALEKTFEQTKYLAGPER 496

  Fly   576 EHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVL 640
            ..||..:.::.:|||:||||.|.|.::                     .|.:.:.:.:|....:.
  Fly   497 AKLAYALGMSESQVKVWFQNRRTKWRK---------------------RHAAEMATAKRKQDDMG 540

  Fly   641 VRNGKPC------------LGDSSKLGADCVSVSSATATAMQNAAAH 675
            ..|...|            :|:|......|.|.||.::...|:...|
  Fly   541 GDNDGDCSETMDSDNESLDMGESPAQNKRCRSNSSGSSQQQQDNYRH 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeobox 548..601 CDD:278475 23/52 (44%)
HGTXNP_001368954.1 ROM1 179..>388 CDD:227709 45/220 (20%)
Homeobox 469..523 CDD:395001 23/53 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45442248
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24340
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.940

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