Protein Alignment vnd and hoxa1

DIOPT Version :10

• Sequence 1: NP_476786.2
• Gene: vnd / 31003
• FlyBaseID: FBgn0261930
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: NP_001008017.1
• Gene: hoxa1 / 493379
• XenbaseID: XB-GENE-480737
• Length: 323
• Species: Xenopus tropicalis
• Alignment Length: 371
• Identity: 82/371 - (22%)
• Similarity: 116/371 - (31%)
• Gaps: 126/371 - (33%)

  Fly   306 HPHLLLPQQHHQQAVAPLPLAHHQSGEAQSHAHANAAAAHLLASHNAAAAAAVAAGQYLPNLPKN 370
            |||      ||          |||:|..|.|.:...:..|.....|
 Frog    64 HPH------HH----------HHQAGAFQHHNNLGMSYTHTSCGSN------------------- 93

  Fly   371 FPGSFGDEMSSYHHMAQTMLQHSGRSAWIKENELYGTQQPASPDSTSPVTSEVSYTYIGSNCQTS 435
                                              ||.|..:...|..|:..|...:
 Frog    94 ----------------------------------YGMQNFSPGYSHFPINQEADVS--------- 115

  Fly   436 PALSGDYKSYSRSADSDALSVGDALHTLHGSSGNGSAGGAPTAHALHNN-----NNNTTNNNN-- 493
                   ..:.:|..|..::.....|..|.|...||      ||.:|::     |.:..|.||
 Frog   116 -------AGFPQSVYSGNIASSVVQHHQHQSYIEGS------AHYIHHSYGPDQNISVANYNNNV 167

  Fly   494 ---HSLKAEGINGAGSGHDDSLNEDGIEEDIDDVD---DADGSGGGDANGSDGLPNKKRKRRVLF 552
               |..:.|......|.     ...|..:..|.:.   :...:|.....|..|.||..|..   |
 Frog   168 SSLHISQREVCRSPSSE-----TSPGPAQTFDWMKVKRNPPKTGKAGEYGFAGQPNTARTN---F 224

  Fly   553 TKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLH 617
            |..|..|||:.|...:||:...|..:|:.::|..|||||||||.|.|.|:.:.|       |||
 Frog   225 TTKQLTELEKEFHFNKYLTRARRVEIAAALQLNETQVKIWFQNRRMKQKKREKE-------GLL- 281

  Fly   618 GHATHPHHPSALPSPRRVAVPVLVR-NGKPCLGDSSKLGADCVSVS 662
                 |..|||.......:..:..: |..||....:...:|.:|.|
 Frog   282 -----PISPSASTGSDEKSEELSEKSNSSPCAPSPASSTSDHLSTS 322

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vnd	NP_476786.2	Homeodomain	546..602	CDD:459649	24/55 (44%)
hoxa1	NP_001008017.1	Homeodomain	221..274	CDD:459649	24/55 (44%)