DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vnd and slou

DIOPT Version :9

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster


Alignment Length:627 Identity:154/627 - (24%)
Similarity:209/627 - (33%) Gaps:202/627 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   172 PAAFYPAALRNALPGLFDAKVPSSQRSGFHISDILNLEGSELKNAAAAAAAAAHHGSDLSHHSAS 236
            |||..|..:.:|    ..|.|...|......|    ||  .||..::.:.:.....|.|...|..
  Fly    60 PAAKIPKFIISA----NGAAVAGKQEQELRYS----LE--RLKQMSSESGSLLSRLSPLQEDSQD 114

  Fly   237 ESTSGHRGQGSHTSPSALSPT------PAGVSADEHHNGSGTGGGAGEADHHSTTEHHA------ 289
            :....|....|.|:.:|.|.|      ||.|         |:...:..|......|.:|      
  Fly   115 KEKPNHNNNNSLTNHNANSNTRRSQSPPASV---------GSVSFSSPAQQRKLLELNAVRHLAR 170

  Fly   290 --PPSHPQ----QQHPH------------HQQHHHPHLLLPQQHHQQAVAPLPLAH-HQSGEAQS 335
              |..||.    |||||            ...|||.|     ||||....|    | ||......
  Fly   171 PEPLQHPHAALLQQHPHLLQNPQFLAAAQQHMHHHQH-----QHHQHPAHP----HSHQHPHPHP 226

  Fly   336 HAHAN---AAAAHLLASHNAAAAAAVAAGQYLPNLPKNFPGSFGDEMSS--------YHHMAQTM 389
            |.|.:   :|..||.|..:::.|....|..  |..|...|....|:..|        ..|.:|..
  Fly   227 HPHPHPHPSAVFHLRAPSSSSTAPPSPATS--PLSPPTSPAMHSDQQMSPPIAPPQNPPHSSQPP 289

  Fly   390 LQHSGRSAWIKENE--------LYGTQQPASPDSTSPVTSEVSYTYIGSNCQTSPALSG----DY 442
            .|....:....:.|        ...|.|.:|..:.:..::.||...|..:..:|.:.||    ||
  Fly   290 QQQQVAAPSDMDLERIKLVAAVAARTTQASSTSALASASNSVSNASISISNSSSGSPSGRDLSDY 354

  Fly   443 -------------------------KSYSRSADSDALSV-------GDALHTLHG-------SSG 468
                                     .:|:||..|:.|:|       .|..|:...       .|.
  Fly   355 GFRIQLGGLAAAAAAAAATSRQIAAATYARSDTSEELNVDGNDEDSNDGSHSTPSVCPVDLTRSV 419

  Fly   469 NGSAGGAPTAHALHNNNNNTTNNNNHSLKAEGI--------NGAGS---GH-------------- 508
            |.||...|::.:...:::........:...|.|        |...|   ||              
  Fly   420 NSSAAANPSSASTSASSDRDAATKRLAFSVENILDPNKFTGNKLPSGPFGHPRQWSYERDEEMQE 484

  Fly   509 --DDSLNEDGIEEDIDDVDDAD--------------------GS--GGGDANGSDGLPNKKRKRR 549
              ||..:||...:|::|:|..|                    ||  |.|.:.|..|..:|.|:.|
  Fly   485 RLDDDQSEDMSAQDLNDMDQDDMCDDGSDIDDPSSETDSKKGGSRNGDGKSGGGGGGGSKPRRAR 549

  Fly   550 VLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHP- 613
            ..||..|...||.:|:..||||..||.:||..:.||.|||||||||.|.|.|: ||.......| 
  Fly   550 TAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK-QNPGMDVNSPT 613

  Fly   614 ----------------GLLHGHAT---------HP---HHPS 627
                            |||:.||.         ||   ||.|
  Fly   614 IPPPGGGSFGPGAYASGLLYSHAVPYPPYGPYFHPLGAHHLS 655

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeobox 548..601 CDD:278475 28/52 (54%)
slouNP_001262808.1 Homeobox 549..601 CDD:278475 28/51 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45442249
Domainoid 1 1.000 53 1.000 Domainoid score I4196
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24340
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.940

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