Protein Alignment vnd and abd-A

DIOPT Version :10

• Sequence 1: NP_476786.2
• Gene: vnd / 31003
• FlyBaseID: FBgn0261930
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: NP_732176.1
• Gene: abd-A / 42037
• FlyBaseID: FBgn0000014
• Length: 590
• Species: Drosophila melanogaster
• Alignment Length: 491
• Identity: 125/491 - (25%)
• Similarity: 194/491 - (39%)
• Gaps: 115/491 - (23%)

  Fly   187 LFDAKVPSSQR-----SGFHISDILNLEGSELKNAAAAAAAAAHHGSDLSHHSASESTSGHRGQG 246
            :||:.:|...:     |..|:: ......|....|||.|||||...:.:|..|:|.:.|.:...|
  Fly     5 VFDSMLPKYPQFQPFISSHHLT-TTPPNSSSAAVAAALAAAAASASASVSASSSSNNNSSNTIAG 68

  Fly   247 SHTSPSALSPTPAGVSADEHHNGSGTGGG---------AGEADH-----HSTTEHHAPP------ 291
            |:||.:..|.:....|::.:.|.:.:||.         .|::.|     .|..:.|.|.
  Fly    69 SNTSNTNNSSSSPSSSSNNNSNLNLSGGSLSPSHLSQHLGQSPHSPVSSSSPFQQHHPQVQQQHL 133

  Fly   292 SHPQQQHPHH--QQHHHPH-------LLLPQQHHQQAVAPLPLAHHQSGEAQSHAHAN-----AA 342
            :|.||||.||  |||||.:       .|..||||...:|...:|.|      .|||..     .:
  Fly   134 NHQQQQHLHHQQQQHHHQYSSLSAALQLQQQQHHISKLAAAAVASH------GHAHQQLLLTPPS 192

  Fly   343 AAHLLASHNAAAAAAVAAG--QYLPNLPKNFPGSFGDEMSSYHHMAQTMLQHSGRSAWIKENELY 405
            |.:..|..::.:.:..|:|  ....:|..|.|||.....|:  ..|.::...:..:|
  Fly   193 AGNSQAGDSSCSPSPSASGSSSLHRSLNDNSPGSASASASA--SAASSVAAAAAAAA-------- 247

  Fly   406 GTQQPASPDSTSPVTSEVSYTYIGSNCQTSPALSG-------DYKSYSRSADSDALSVGDALHTL 463
                 |:..|:..:.:...|.|:.::..:...|||       :.||.||..|           |:
  Fly   248 -----AAASSSFAIPTSKMYPYVSNHPSSHGGLSGMAGFTGLEDKSCSRYTD-----------TV 296

  Fly   464 HGSSGNGSAGGAPTAHALHNNNNNTTNNNNHSLKAEGINGAGSGHDDSLNEDGIEEDIDDVDDAD 528
            ..|..:.|...:.:|.......:.|...:..|..:.|..|.     |||.....:.....:..|.
  Fly   297 MNSYQSMSVPASASAQFAQFYQHATAAASAVSAASAGAIGV-----DSLGNACTQPASGVMPGAG 356

  Fly   529 GSGG---------------------------GDANGSDGLPNKKRKRRVLFTKAQTYELERRFRQ 566
            |:||                           ||.||.:|.|  :|:.|..:|:.||.|||:.|..
  Fly   357 GAGGAGIADLPRYPWMTLTDWMGSPFERVVCGDFNGPNGCP--RRRGRQTYTRFQTLELEKEFHF 419

  Fly   567 QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR 602
            ..||:...|..:|..:.||..|:||||||.|.|.|:
  Fly   420 NHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKK 455

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vnd	NP_476786.2	Homeodomain	546..602	CDD:459649	24/55 (44%)
abd-A	NP_732176.1	Homeodomain	399..455	CDD:459649	24/55 (44%)
		Abdominal-A	456..478	CDD:403567	125/491 (25%)