Protein Alignment vnd and Scr

DIOPT Version :10

• Sequence 1: NP_476786.2
• Gene: vnd / 31003
• FlyBaseID: FBgn0261930
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Alignment Length: 556
• Identity: 130/556 - (23%)
• Similarity: 183/556 - (32%)
• Gaps: 175/556 - (31%)

  Fly   231 SHHSASESTSGHRGQGSHTSPSALSPTPAGVSADEHHNGSGTGGGAGEA--------DHHSTTEH 287
            :|..|..|::|..|.|:..|...:   |:|          ||.||.|.|        |:......
  Fly    30 NHPGAGNSSAGGSGGGAGGSGGVV---PSG----------GTNGGQGSAGAATPGANDYFPAAAA 81

  Fly   288 HAPPSHPQQQHPHHQQHH----------------HPHLLLPQQHHQQAVAPLPLAHHQSGEAQSH 336
            :.|..:|.....|:....                .|..||.||..||             :.|.|
  Fly    82 YTPNLYPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQ-------------QQQQH 133

  Fly   337 AHANAAAAHLLASHNAAAAAAVAAGQYLPNLPKNFPGSFGDEMSSYHHMAQTMLQHSGRSAWIKE 401
            ||               |||||||.|.             .:::...|..|...|.....:....
  Fly   134 AH---------------AAAAVAAQQQ-------------QQLAQQQHPQQQQQQQQANISCKYA 170

  Fly   402 NELYGTQQPASPDSTSPVTSEVSYTYIGSNCQTSPALSGDYKSYSRSADSD--------ALSVGD 458
            |:      |.:|..:.  ...||    |||...:.|.|.:..|.|.::..|        .||...
  Fly   171 ND------PVTPGGSG--GGGVS----GSNNNNNSANSNNNNSQSLASPQDLSTRDISPKLSPSS 223

  Fly   459 ALHTLHGSSGNGSAGGAPTAHALHNNNNNTTNNNNHSLKAEGINGA-----------GSGHDDSL 512
            .:.::..|...|..||:..|.|.     ....|||||  ..|::|.           |.|..||.
  Fly   224 VVESVARSLNKGVLGGSLAAAAA-----AAGLNNNHS--GSGVSGGPGNVNVPMHSPGGGDSDSE 281

  Fly   513 NEDGIEEDIDDVDDADGSGGGDANGSDGLPNKKR---------------KRRVLFTKAQTYELER 562
            ::.|     ::...:..||.|..|.....|..||               ::|..:|:.||.|||:
  Fly   282 SDSG-----NEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEK 341

  Fly   563 RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN---------EKGYEGHPGLLHG 618
            .|...|||:...|..:|..:.||..|:||||||.|.|.|:...         ..|..|||  .|.
  Fly   342 EFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVPYHMGPYGHP--YHQ 404

  Fly   619 HATHPH---HPSALPS----------------PRRVAVPVLVRNGKPCLGDSSKLGADCVSVSSA 664
            ...||.   |.|| .:                |.:.|......:|... .|...:|...|.|...
  Fly   405 FDIHPSQFAHLSAXDAWHFSGTGXRLNQLYQEPYQTAAAASAASGYQS-QDGGPIGGGSVGVGGG 468

  Fly   665 TA--TAMQNAAAHHLVALNGAAAYQHAAAAAAGLHA 698
            ..  .::.|..:      ||:......|:||:...|
  Fly   469 AGGPGSLANGGS------NGSGPNSLFASAASSSQA 498

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vnd	NP_476786.2	Homeodomain	546..602	CDD:459649	25/70 (36%)
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	24/55 (44%)