Protein Alignment vnd and lms

DIOPT Version :10

• Sequence 1: NP_476786.2
• Gene: vnd / 31003
• FlyBaseID: FBgn0261930
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: NP_611491.2
• Gene: lms / 37322
• FlyBaseID: FBgn0034520
• Length: 378
• Species: Drosophila melanogaster
• Alignment Length: 242
• Identity: 65/242 - (26%)
• Similarity: 101/242 - (41%)
• Gaps: 62/242 - (25%)

  Fly   500 GINGAGSGHDDSLNEDGIEEDIDDVDDA--DGSGGGDANGSDGLPNKKRKRRVLFTKAQTYELER 562
            |.:.|.|....|..:|.:::...|:|.|  ||:|.||        ::|::.|..|:.||...||.
  Fly    47 GASRASSPATSSCLDDNMDDGKSDIDLASDDGNGLGD--------DRKKRPRTAFSAAQIKALET 103

  Fly   563 RFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE------KGYEGHPGLLHGHAT 621
            .|.:.:|||..:|..||..::||.||:||||||.|.|.||....      ..|....|:  |...
  Fly   104 EFERGKYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHYYAQLGI--GGLA 166

  Fly   622 HP-----------HHPSALPSPRRVAVPVLVRNGKPCLGDSSKLGADCVSVSSATATAMQ----- 670
            .|           ..|:. |:|    :..::.||       |...|...|.::||.:.|:
  Fly   167 RPMVVGDRLWLFSQTPTG-PTP----IQSIMLNG-------SGSAAPMASATTATGSPMRPYATS 219

  Fly   671 ------------NAAAHHLVA----LNGAAAYQHAAAAAAGLHAHAH 701
                        .:|.:.::|    ||.|..:..|...|.|:.|.::
  Fly   220 GGMPPLPGPSVMESARNAILARGQPLNFALPFGVAKPPAGGVPAASY 266

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vnd	NP_476786.2	Homeodomain	546..602	CDD:459649	25/55 (45%)
lms	NP_611491.2	Cnd2	33..>106	CDD:450400	20/66 (30%)
		Homeodomain	87..143	CDD:459649	25/55 (45%)