DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and Cdx1

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001406562.1 Gene:Cdx1 / 364883 RGDID:621233 Length:273 Species:Rattus norvegicus


Alignment Length:103 Identity:36/103 - (34%)
Similarity:50/103 - (48%) Gaps:8/103 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   530 SGGGDANGSDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQ 594
            :.||   |..|....|.|.||::|..|..|||:.|...||::...:..||:.:.||..|||||||
  Rat   142 AAGG---GGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQ 203

  Fly   595 NHRYKTKRAQNEKGYEGHPGLLHGHATHPHHPSALPSP 632
            |.|.|.::...:|..:...     ....|..|:.||.|
  Rat   204 NRRAKERKVNKKKQQQQQQ-----QQQQPMPPTQLPLP 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 25/55 (45%)
Cdx1NP_001406562.1 Caudal_act 13..140 CDD:461413
Homeodomain 156..211 CDD:459649 25/54 (46%)
Blue background indicates that the domain is not in the aligned region.

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