Protein Alignment vnd and cad

DIOPT Version :10

• Sequence 1: NP_476786.2
• Gene: vnd / 31003
• FlyBaseID: FBgn0261930
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: NP_001260641.1
• Gene: cad / 35341
• FlyBaseID: FBgn0000251
• Length: 445
• Species: Drosophila melanogaster
• Alignment Length: 526
• Identity: 126/526 - (23%)
• Similarity: 184/526 - (34%)
• Gaps: 189/526 - (35%)

  Fly   292 SHPQQQHPHHQQHHHPHLL-----------LPQQHHQQAVAPLPLAHHQSGEA-QSHAHANAAAA 344
            ||.....|:.|:|...:|.           .|..||      .|..|...|:. .|||..:||||
  Fly     3 SHYYNTLPYTQKHSAANLAYASAAGQPWNWTPNYHH------TPPNHQFLGDVDSSHAAHHAAAA 61

  Fly   345 HLL---ASHNAAAAAAVAAGQY-------LPNLPKNFPGSFGDEMSSYHHMAQTMLQHSGRSAWI 399
            |.:   :.|...:|||.:||::       ..|..:|.|.|....|..:||
  Fly    62 HQMYYNSHHMFHSAAAASAGEWHSPASSTADNFVQNVPTSAHQLMQQHHH--------------- 111

  Fly   400 KENELYGTQQPASPDSTSPVTSEVSYTYIGSNCQTSPALSGDYKSYSRSADSDALSVGDAL---- 460
              :..:.:...||..|:|           ......:|.|:....|...........||.|.
  Fly   112 --HHAHASSSSASSGSSS-----------SGGAPGAPQLNETNSSIGVGGAGGGGGVGGATDGGP 163

  Fly   461 ------HTLHGSSG--------NG---SAGGAPT---------AH---ALHNNNNNTTNNNNHSL 496
                  |..|.:.|        :|   |:.||||         ||   |:.|||||..||||
  Fly   164 GSAPPNHQQHIAEGLPSPPITVSGSEISSPGAPTSASSPHHHLAHHLSAVANNNNNNNNNNN--- 225

  Fly   497 KAEGINGAGSGHDDSLNEDGIE-----------------------------------EDIDDVDD 526
                   :.|.|:::.|.:.:.                                   ||:.|:.|
  Fly   226 -------SPSTHNNNNNNNSVSNNNRTSPSKPPYFDWMKKPAYPAQPQPDLSSSPNLEDLSDLLD 283

  Fly   527 ADGSGGGDANGSDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKI 591
            |.|.           ...|.|.||::|..|..|||:.:...||::...:..||..:.|:..||||
  Fly   284 ASGK-----------TRTKDKYRVVYTDFQRLELEKEYCTSRYITIRRKSELAQTLSLSERQVKI 337

  Fly   592 WFQNHRYKTKRAQNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGDSSKLGA 656
            ||||.|.| :|.||:||.:  |.::.....|..:...|.:..::         :|.|
  Fly   338 WFQNRRAK-ERKQNKKGSD--PNVMGVGVQHADYSQLLDAKAKL---------EPGL-------- 382

  Fly   657 DCVSVSSATATAMQNAAAHHLVALNGAAAYQHAAAAAAGLHAHAHAHAH------AHGHGHPHAH 715
               .:|.:.|.:|...||.::.|:.              ||.|..||:|      ||.|.....|
  Fly   383 ---HLSHSLAHSMNPMAAMNIPAMR--------------LHPHLAAHSHSLAAVAAHSHQLQQQH 430

  Fly   716 -AQRAA 720
             ||.:|
  Fly   431 SAQMSA 436

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vnd	NP_476786.2	Homeodomain	546..602	CDD:459649	23/55 (42%)
cad	NP_001260641.1	Homeodomain	293..348	CDD:459649	23/55 (42%)