Protein Alignment vnd and B-H1

DIOPT Version :10

• Sequence 1: NP_476786.2
• Gene: vnd / 31003
• FlyBaseID: FBgn0261930
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: NP_523387.1
• Gene: B-H1 / 32724
• FlyBaseID: FBgn0011758
• Length: 544
• Species: Drosophila melanogaster
• Alignment Length: 730
• Identity: 166/730 - (22%)
• Similarity: 228/730 - (31%)
• Gaps: 311/730 - (42%)

  Fly    38 SAITVSPSSP--ATPKRPLRTSTPSLERKREREDREDREDRKERQERHERDRDHERFAAVFSTAS 100
            |.:|.:||.|  |.|:.....||                    .|::|.:...|
  Fly     6 SILTQTPSEPNAAHPQLHHHLST--------------------LQQQHHQHHLH----------- 39

  Fly   101 TTVPTNTSSSSGLAPEQLRIPTGAAAFSGFPGLHSMSSLMLPSSAAVAAAAAAPFLPWSPILLPP 165
                      .||.|.       |.|.|    :||.:::....|...|:....|
  Fly    40 ----------YGLQPP-------AVAHS----IHSTTTMSSGGSTTTASGIGKP----------- 72

  Fly   166 WNHALLPAAFYPAALRNALPGLFDAKVPSSQRSGFHISDILNLEGSELKNAAAAAAAAAHHGSDL 230
                                          .||.|.|:||  |.||    ||||......|...|
  Fly    73 ------------------------------NRSRFMINDI--LAGS----AAAAFYKQQQHHQQL 101

  Fly   231 SHHSASESTSGHRGQGSHTSPSALSPTPAGVSADEHHNG----SGTGGGAG---EADHHSTTEHH 288
            .||: :.:.||..|..|          ||..:.:.:.||    :....|.|   .|.||  .:.|
  Fly   102 HHHN-NNNNSGSSGGSS----------PAHSNNNNNINGDNCEASNVAGVGVLPSALHH--PQPH 153

  Fly   289 APPSHPQQQHPHHQQHHHPHLLLPQQHHQQAVA---PLPLAHHQSGEAQSHAHANAAAA--HLLA 348
             ||:|| ..|||...|.|..|     .|....|   .|.:|.:.:...|.:|.|.||||  :..|
  Fly   154 -PPTHP-HTHPHALMHPHGKL-----GHFPPTAGGNGLNVAQYAAAMQQHYAAAAAAAAARNNAA 211

  Fly   349 SHNAAAAAAVAAGQYLPNLPKNFPGSFG---------DEMSSYHHMAQTMLQHSGRSAWIKENEL 404
            :..||||||.|||...|.:.....|..|         |:.|.||                :|||
  Fly   212 AAAAAAAAAAAAGVAAPPVDGGVDGGVGLAPPAGGDLDDSSDYH----------------EENE- 259

  Fly   405 YGTQQPASPDSTSPVTSEVSYTYIGSNCQTSPALSGDYKSYSRSADSDALSVGDALHTLHGSSGN 469
                                                         |.|              ||
  Fly   260 ---------------------------------------------DCD--------------SG- 264

  Fly   470 GSAGGAPTAHALHNNNNNTTNNNNHSLKAEGINGAGSGHDDSLNEDGIEEDIDDVDDADGSGGGD 534
                                |.::||:.:.|      |.|               ||.:....|.
  Fly   265 --------------------NMDDHSVCSNG------GKD---------------DDGNSVKSGS 288

  Fly   535 ANGSDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYK 599
            .:...||..|:||.|..||..|...||:.|.:|:|||..||:.||..:.|:..|||.|:||.|.|
  Fly   289 TSDMSGLSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQERQELAHKLDLSDCQVKTWYQNRRTK 353

  Fly   600 TKR---------------AQNEKGYEGHP-----------GLLHGHATHP-----HHPSALPSPR 633
            .||               |..::.|.|.|           |..||...|.     :..:|..:..
  Fly   354 WKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAAHGATPHTNIDIYYRQAAAAAAM 418

  Fly   634 RVAVPVLVRNGKPCLGDSSKLGADCVSVSSATATAMQNAAAHHLVALNGAAAYQHAAAAAAGLHA 698
            :..:|..:..|.|.:|....:|......|..:|::          :|:..::|..:|||||.
  Fly   419 QKPLPYNLYAGVPSVGVGVGVGVGPAPFSHLSASS----------SLSSLSSYYQSAAAAAS--- 470

  Fly   699 HAHAHAHAHGHGHPH 713
                   |...|.||
  Fly   471 -------AANPGGPH 478

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vnd	NP_476786.2	Homeodomain	546..602	CDD:459649	26/55 (47%)
B-H1	NP_523387.1	Homeodomain	300..356	CDD:459649	26/55 (47%)