DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and Nkx3-1

DIOPT Version :9

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001029316.1 Gene:Nkx3-1 / 305999 RGDID:1305369 Length:238 Species:Rattus norvegicus


Alignment Length:183 Identity:56/183 - (30%)
Similarity:74/183 - (40%) Gaps:54/183 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   498 AEGINGAGSGHDDSLNEDGIEEDIDDVDDADGSGG--GDANGSDGLPNKKR-------------- 546
            ||...|..|........|...:...::|:|:||..  .|..|....|.:.|              
  Rat    43 AERRGGQPSTPQHQCQPDPKRDSASELDEAEGSSVTLEDPPGIRSSPTETRAETESDAHFETYLL 107

  Fly   547 --------------------KRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKI 591
                                :.|..|:..|..||||:|..|:|||||||.|||..::||.|||||
  Rat   108 DCEHTPVLSSAPQVTKQPQKRSRAAFSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKI 172

  Fly   592 WFQNHRYKTKRAQ-------NEKGYE-----------GHPGLLHGHATHPHHP 626
            ||||.||||||.|       .||...           ....|:..:|::|::|
  Rat   173 WFQNRRYKTKRRQLSEDLGVLEKNSTLSLPTLKDDSLSRASLVSVYASYPYYP 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeobox 548..601 CDD:278475 33/52 (63%)
Nkx3-1NP_001029316.1 Homeobox 129..182 CDD:278475 33/52 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0842
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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