DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and msx1b

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_571335.1 Gene:msx1b / 30511 ZFINID:ZDB-GENE-980526-26 Length:257 Species:Danio rerio


Alignment Length:173 Identity:57/173 - (32%)
Similarity:75/173 - (43%) Gaps:41/173 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   506 SGHDDSLNEDGIEEDIDDVDDADGSGGGDANGSDGLPN----------KKRKRRVLFTKAQTYEL 560
            |...||||:|  .|::.|.:.:..|...........|:          ..||.|..|:.:|...|
Zfish    92 SSVSDSLNDD--SEELSDKEQSTWSNSSSFTSPPRHPSPTPCTLRKHKTNRKPRTPFSTSQLLSL 154

  Fly   561 ERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYE--------------- 610
            ||:|||::|||..||...::.:.||.|||||||||.|.|.||.| |...|               
Zfish   155 ERKFRQKQYLSIAERAEFSNSLNLTETQVKIWFQNRRAKAKRLQ-EAELEKFKCASKPLLAPFAL 218

  Fly   611 ----GHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLG 649
                |.|..|:|      .|::.|.|  |.:|.|. ||....|
Zfish   219 PFPLGSPSSLYG------PPASFPRP--VPMPGLF-NGPVSYG 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 29/55 (53%)
msx1bNP_571335.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 91..146 13/55 (24%)
Homeodomain 140..196 CDD:459649 29/55 (53%)
Blue background indicates that the domain is not in the aligned region.

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