DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and hoxd3a

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_571200.1 Gene:hoxd3a / 30349 ZFINID:ZDB-GENE-990415-120 Length:396 Species:Danio rerio


Alignment Length:339 Identity:86/339 - (25%)
Similarity:117/339 - (34%) Gaps:107/339 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   424 SYTYIGSNCQ--TSPALSGDYKSYSRSADSDALSVGDALH---TLHGSSGNGSAG---------- 473
            |||| |...|  :|.::..||:  |........||..|.|   .::||....||.          
Zfish    23 SYTY-GPTHQGFSSSSIENDYQ--SPICPIQTTSVRQATHKNGDINGSCMRPSASQGNSQPESIS 84

  Fly   474 ----GAPTAHALHNNNNNTTNNNNHSLKAEGINGAG-------------------SGHDDSLNED 515
                .||.|.:..:.:.|:|...    |:...||:.                   :....|.|..
Zfish    85 EQQQAAPLAASSPSPSTNSTQKK----KSPSSNGSSTATPVISKQIFPWMKETRQNAKQKSTNCP 145

  Fly   516 GIEEDIDDVDDADGSGGGDANGSDGLPNKKRKR-RVLFTKAQTYELERRFRQQRYLSAPEREHLA 579
            ...|..||...               |....|| |..:|.||..|||:.|...|||..|.|..:|
Zfish   146 AAGETCDDKSP---------------PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMA 195

  Fly   580 SLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNG 644
            :|:.||..|:||||||.|.|.|:.|..|      |::|....|        ||.|          
Zfish   196 NLLNLTERQIKIWFQNRRMKYKKDQKSK------GIMHSPLGH--------SPDR---------- 236

  Fly   645 KPCLGDSSKLG--ADCVSVSSAT---------ATAMQN--AAAHHLVALNG---------AAAYQ 687
            .|.|..|:.:|  ....:|:|.:         |...||  ..|.:...|.|         ...|.
Zfish   237 SPPLSGSNHIGYSGQLPNVNSLSYDAPSPPSFAKPQQNIYGLAAYTAPLGGCIPQQKRYPGTEYD 301

  Fly   688 HAAAAAAGLHAHAH 701
            |.:....|..|:|:
Zfish   302 HHSMQGNGSFANAN 315

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 28/56 (50%)
hoxd3aNP_571200.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..163 32/161 (20%)
COG5576 116..237 CDD:227863 43/159 (27%)
Antp-type hexapeptide 126..131 0/4 (0%)
Homeodomain 162..218 CDD:459649 28/55 (51%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..246 11/50 (22%)
DUF4074 333..394 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 364..396
Blue background indicates that the domain is not in the aligned region.

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