DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and Hoxb3

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001100512.1 Gene:Hoxb3 / 303488 RGDID:1310780 Length:429 Species:Rattus norvegicus


Alignment Length:453 Identity:110/453 - (24%)
Similarity:148/453 - (32%) Gaps:140/453 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   348 ASHNAAAAAAVAAGQYLPNLPKNFPGSFG--------------DEMSSYHHMAQTMLQHSGRSA- 397
            |::....|||:..|.      .::|||.|              ..:...:..:...||..|.:| 
  Rat     4 ATYYDNTAAALFGGY------SSYPGSNGFGYDGPPQPPFQAATHLEGDYQRSACSLQSLGNAAP 62

  Fly   398 WIKENELYGT---------QQPASPDSTSPVTSEVSYTYIGSNCQTSPALSGDYKSYSRSADSDA 453
            ..|..||.|:         ..||.|.|..|..:..| |...||....|:.||..|.         
  Rat    63 HAKSKELNGSCMRPGLAPEPLPAPPGSPPPSAAPTS-TTSNSNNGGGPSKSGPPKC--------- 117

  Fly   454 LSVGDALHTLHGSSGNGSAGGAPTAHA---LHNNNNNTTNNNNHSLKAEGINGAGSGHDDSLNED 515
                       |:|.|.:.    |...   :..:...:...|:....|||..|.|.|.....:..
  Rat   118 -----------GASSNSTL----TKQIFPWMKESRQTSKLKNSSPGTAEGCGGGGGGGGGGGSSS 167

  Fly   516 GIEEDIDDVDDADGSGGGDANGSDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLAS 580
            |          ..|||||..:.|.......::.|..:|.||..|||:.|...|||..|.|..:|:
  Rat   168 G----------GGGSGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMAN 222

  Fly   581 LIRLTPTQVKIWFQNHRYKTKRAQNEKGY---------EGHP--------GLLHG-HATHPHHPS 627
            |:.|:..|:||||||.|.|.|:.|..||.         .|.|        |.::. |:..|.:.|
  Rat   223 LLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYDS 287

  Fly   628 ALPSP--------RRVAVP---------------------------VLVRNGKPCLGDSSKLGAD 657
              |||        ...|:|                           ||..|| ...|..:..|:.
  Rat   288 --PSPPAFSKGHQNAYALPSNYQPPLKGCGAPQKYPPTPAPEYESHVLQANG-GAYGTPTMQGSP 349

  Fly   658 CVSVSSATATAMQNAAAHHLVALN-------GAAAYQHAAAAAAGLHAHAHAHAHAHGHGHPH 713
            ........|..:...|...|..||       |...|..||..|.|.|         ||...||
  Rat   350 VYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAAPMAPGQH---------HGPCDPH 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 25/55 (45%)
Hoxb3NP_001100512.1 Homeodomain 188..244 CDD:459649 25/55 (45%)
DUF4074 365..427 CDD:463833 15/48 (31%)

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