DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and hoxb2a

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_571191.1 Gene:hoxb2a / 30338 ZFINID:ZDB-GENE-990415-103 Length:390 Species:Danio rerio


Alignment Length:218 Identity:64/218 - (29%)
Similarity:92/218 - (42%) Gaps:41/218 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   434 TSPALS---GDY---KSYSRSADSD-ALSVGDALHTLHGSSGNGSAGGAPTAHALHNNNNNTTNN 491
            |.|:||   |:.   :|..|:|.:. .|....|..|.|.......:||||.||.........::.
Zfish    50 TIPSLSPCTGNQARPRSQKRTASNGLQLRTQTAPPTQHQQGPAPLSGGAPLAHEFPWMKEKKSSK 114

  Fly   492 N------NHSLKAEGINGAGSGHDDSLNEDGIEEDID---DVDDADGSGGGDANGSDGLPNKKRK 547
            .      ..:..|...:.|.||:..:    |:|...:   .:|:..||               |:
Zfish   115 KCPKPGATAAAAAASPSQASSGYTTA----GLESPTEIQGGLDNVSGS---------------RR 160

  Fly   548 RRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR--AQNEKGYE 610
            .|..:|..|..|||:.|...:||..|.|..:|:|:.||..|||:||||.|.|.||  ..:..|.|
Zfish   161 LRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTTHHRDGQE 225

  Fly   611 GHPG---LLHG-HATHPHHPSAL 629
            |.|.   ||.| .|:.|:...:|
Zfish   226 GEPSGFDLLEGTDASSPYSSQSL 248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 25/55 (45%)
hoxb2aNP_571191.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 40..73 8/22 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 81..100 6/18 (33%)
Antp-type hexapeptide 103..108 0/4 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 108..155 7/50 (14%)
Homeodomain 159..215 CDD:459649 25/55 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 211..338 13/38 (34%)
PRK11907 237..>320 CDD:237019 3/12 (25%)

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