DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and Nkx2-8

DIOPT Version :9

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001100202.1 Gene:Nkx2-8 / 299061 RGDID:1310629 Length:234 Species:Rattus norvegicus


Alignment Length:203 Identity:97/203 - (47%)
Similarity:107/203 - (52%) Gaps:38/203 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   508 HDDSLNEDGIEEDIDDVDDADGSG----GGDANGSDGLPNKKRKRRVLFTKAQTYELERRFRQQR 568
            |..|.:|.|:|     ...||.|.    |..:.|||.  .|:|||||||:||||.||||||||||
  Rat    47 HYPSSDESGLE-----TSPADSSQLASLGRASPGSDA--EKRRKRRVLFSKAQTLELERRFRQQR 104

  Fly   569 YLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLHG---------HATHPH 624
            ||||||||.||.|:|||||||||||||||||.||.:       .||:...         ||.   
  Rat   105 YLSAPEREQLARLLRLTPTQVKIWFQNHRYKLKRGR-------APGVTESSDVTASADLHAA--- 159

  Fly   625 HPSALPSPRRVAVPVLVRNGKPCLGDSSKLGA---DCVSVSSATATAMQNAAAHHL-VALNGAAA 685
             |..|   |||.|||||.:..||.|......|   |..|...|||..:|...|... .||....|
  Rat   160 -PGLL---RRVVVPVLVHDRSPCNGRGEGTAAVPQDKCSSRLATACPVQGYTAFGPGSALGLFPA 220

  Fly   686 YQHAAAAA 693
            |||.|..|
  Rat   221 YQHLAPPA 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeobox 548..601 CDD:278475 47/52 (90%)
Nkx2-8NP_001100202.1 Homeobox 84..137 CDD:278475 47/52 (90%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0842
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D450160at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR24340
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.880

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