DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and Hoxd3

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001257967.1 Gene:Hoxd3 / 288152 RGDID:1588601 Length:432 Species:Rattus norvegicus


Alignment Length:437 Identity:103/437 - (23%)
Similarity:138/437 - (31%) Gaps:127/437 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   361 GQYLPNLPK---------NFPGSFGDEMSSYHHMAQTMLQHSGRSAWIKENELYGTQQPASPDST 416
            ||....||:         ..||.||    .|              .:.|..:.||...|..|...
  Rat     6 GQQALELPECTMQKAAYYENPGLFG----GY--------------GYSKATDAYGYSTPHQPYPP 52

  Fly   417 SPVTSEVSYTYIGSNC--QTSPALSGDYKSYSRSADSDALSVGDALHTLHGSSGNGSAGGAPTAH 479
            ....:.:...|..|.|  |:|..|..       .|...|...|..:....|:|..|..|..|.  
  Rat    53 PAAANSLDSDYPSSACSIQSSAPLRA-------PAHKGAELNGSCMRPGTGNSQGGGGGNQPP-- 108

  Fly   480 ALHNNNN-------------NTTNNNNHSLKAEGINGAGSGHDDSLNEDGIEEDI---------- 521
            .|::...             ::..|....:.|:...|   |.:.|.:...|.:.|          
  Rat   109 GLNSEQQPPQPPPPPPTLPPSSPTNPGSGVPAKKTKG---GPNASSSSSTISKQIFPWMKESRQN 170

  Fly   522 -DDVDDADGSGGGDANGSDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLT 585
             ...:....||....:.|...|..||. |..:|.||..|||:.|...|||..|.|..:|:|:.||
  Rat   171 SKQKNSCATSGENCEDKSPPGPASKRV-RTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLT 234

  Fly   586 PTQVKIWFQNHRYKTKRAQNEKG------------------------YEGH----PGLLHGHATH 622
            ..|:||||||.|.|.|:.|..||                        |.|.    |||.:...:.
  Rat   235 ERQIKIWFQNRRMKYKKDQKAKGILHSPAGQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSP 299

  Fly   623 P----HHP-------------SALPSPRRVAVP-----VLVRNGKPCLGD--SSKLGADCVSVSS 663
            |    ..|             |.||..:|.|.|     .:..||    |.  |:.|....|.|..
  Rat   300 PAFAKSQPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNG----GGFASANLQGSPVYVGG 360

  Fly   664 ATATAMQNAAA-----HHLVALNGAAAYQHAAAAAAGLHAHAHAHAH 705
            ....:|..|:.     .||...:.|:.....||...|.|.|.....|
  Rat   361 NFVDSMAPASGPVFNLGHLSHPSSASVDYSCAAQIPGNHHHGPCDPH 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 27/55 (49%)
Hoxd3NP_001257967.1 Homeodomain 195..251 CDD:459649 28/56 (50%)
DUF4074 369..430 CDD:463833 10/39 (26%)

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