Protein Alignment vnd and Hoxc6

DIOPT Version :10

• Sequence 1: NP_476786.2
• Gene: vnd / 31003
• FlyBaseID: FBgn0261930
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: XP_063119084.1
• Gene: Hoxc6 / 252885
• RGDID: 620626
• Length: 264
• Species: Rattus norvegicus
• Alignment Length: 373
• Identity: 74/373 - (19%)
• Similarity: 101/373 - (27%)
• Gaps: 174/373 - (46%)

  Fly   290 PPSHPQQQH---PHHQ------------QHHHPHLLLP------QQHHQQAVAPLPLAHHQSGEA 333
            ||.....|:   |.|.            ||||..|..|      ....|.:...|      .|..
  Rat    18 PPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSL------QGPG 76

  Fly   334 QSHAHANAAAAHLLASHNAAAAAAVAAGQYLPNLPKNFPGSFGDEMSSYHHMAQTMLQHSGRSAW 398
            .|.||..|.|.|                                     ||
  Rat    77 NSRAHGPAQAGH-------------------------------------HH-------------- 90

  Fly   399 IKENELYGTQQPASPDSTSPVTSEVSYTYIGSNCQTSPALSGDYKSYSRSADSDALSVGDALHTL 463
                          |:.:.|:            |:.:| |||...|.|.:..:.:....|
  Rat    91 --------------PEKSQPL------------CEPAP-LSGASASPSPAPPACSQPAPD----- 123

  Fly   464 HGSSGNGSAGGAPTAHALHNNNNNTTNNNNHSLKAEGINGAGSGHDDSLNEDGIEEDIDDVDDAD 528
            |.||   :|...|..:......:.:|.|.|::
  Rat   124 HPSS---AASKQPIVYPWMKKIHVSTVNPNYN--------------------------------- 152

  Fly   529 GSGGGDANGSDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWF 593
               ||:          .::.|..:|:.|..|||:.|...|||:...|..:|..:.|:..|:||||
  Rat   153 ---GGE----------PKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWF 204

  Fly   594 QNHRYKTK---RAQNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVP 638
            ||.|.|.|   |..|.|.....|.            .|.||....|.|
  Rat   205 QNRRMKWKKDHRLPNTKVRSAPPA------------GAAPSTLSAATP 240

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vnd	NP_476786.2	Homeodomain	546..602	CDD:459649	23/58 (40%)
Hoxc6	XP_063119084.1	None