DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and Hoxd3

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_034598.2 Gene:Hoxd3 / 15434 MGIID:96207 Length:433 Species:Mus musculus


Alignment Length:432 Identity:96/432 - (22%)
Similarity:138/432 - (31%) Gaps:116/432 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   361 GQYLPNLPK---------NFPGSFGDEMSSYHHMAQTMLQHSGRSAWIKENELYGTQQPASPDST 416
            ||....||:         ..||.||    .|              .:.|..:.||...|..|...
Mouse     6 GQLTLELPECTMQKAAYYENPGLFG----GY--------------GYSKATDTYGYSTPHQPYPP 52

  Fly   417 SPVTSEVSYTYIGSNC--QTSPALSGDYKSYSRSADSDALSVGDALHTLHGSSGNGSAGGAPTAH 479
            ....:.:...|..|.|  |:|..|..       .|...|...|..:....|:|..|..|..|.  
Mouse    53 PAAANSLDSDYPSSACSIQSSAPLRA-------PAHKGAELNGSCMRPGTGNSQGGGGGNQPP-- 108

  Fly   480 ALHNNNN--------------NTTNNNNHSLKAEGING--AGSGHDDSLNED---GIEEDIDDVD 525
            .|::...              ::..|....:.|:...|  :.|....::::.   .::|...:..
Mouse   109 GLNSEQQPPQPPPPPPPTLPPSSPTNPGSGVPAKKTKGGLSASSSSSTISKQIFPWMKESRQNSK 173

  Fly   526 DADGSGGGDANGSDGLPNKKRKRRV--LFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQ 588
            ..:.......|..|..|.....:||  .:|.||..|||:.|...|||..|.|..:|:|:.||..|
Mouse   174 QKNSCATSGENCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQ 238

  Fly   589 VKIWFQNHRYKTKRAQNEKG------------------------YEGH----PGLLHGHATHP-- 623
            :||||||.|.|.|:.|..||                        |.|.    |||.:...:.|  
Mouse   239 IKIWFQNRRMKYKKDQKAKGILHSPAGQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAF 303

  Fly   624 --HHP-------------SALPSPRRVAVP-----VLVRNG-----KPCLGDSSKLGADCVSVSS 663
              ..|             |.||..:|...|     .:..||     ....|....:|.:.|...:
Mouse   304 AKSQPNMYGLAAYTAPLSSCLPQQKRYPAPEFEPHPMASNGGGFASANLQGSPVYVGGNFVDSMA 368

  Fly   664 ATATAMQNAAAHHLVALNGAAAYQHAAAAAAGLHAHAHAHAH 705
            .|:..:.|..  ||...:.|:.....||...|.|.|.....|
Mouse   369 PTSGPVFNLG--HLSHPSSASVDYSCAAQIPGNHHHGPCDPH 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 27/57 (47%)
Hoxd3NP_034598.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..198 25/162 (15%)
Antp-type hexapeptide 161..166 0/4 (0%)
Homeodomain 196..252 CDD:459649 27/55 (49%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 258..280 1/21 (5%)
DUF4074 370..431 CDD:463833 11/41 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..433 2/8 (25%)

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