DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and Hoxb3

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_034588.2 Gene:Hoxb3 / 15410 MGIID:96184 Length:433 Species:Mus musculus


Alignment Length:407 Identity:96/407 - (23%)
Similarity:133/407 - (32%) Gaps:138/407 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   426 TYIGSN-----------CQTSPALSGDYK---------------SYSRSADSDALSVGDALHTLH 464
            :|.|||           .|.:..|.|||:               :.|:..:...:..|.|...|.
Mouse    20 SYPGSNGFGYDGPPQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLP 84

  Fly   465 GSSGNGSAGGAPTAHALHNNN---------------NNTT-----------NNNNHSLK------ 497
            ...|:.....|||:...::||               :|:|           :.....||      
Mouse    85 APPGSPPPSAAPTSTTSNSNNGGGPSKSGPPKCGAGSNSTLTKQIFPWMKESRQTSKLKNSSPGT 149

  Fly   498 AEGINGAGSGHDDSLNEDGIEEDIDDVDDADGSGGGDANGSDGLP---NKKRKRRVLFTKAQTYE 559
            |||..|.|.|........|         .:.|.|||...|.|..|   ...::.|..:|.||..|
Mouse   150 AEGCGGGGGGGGGGGGGGG---------GSSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVE 205

  Fly   560 LERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGY---------EGHP-- 613
            ||:.|...|||..|.|..:|:|:.|:..|:||||||.|.|.|:.|..||.         .|.|  
Mouse   206 LEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQ 270

  Fly   614 ------GLLHG-HATHPHHPSALPSP--------RRVAVP------------------------- 638
                  |.::. |:..|.:.|  |||        ...|:|                         
Mouse   271 PMQSTAGFMNALHSMTPSYDS--PSPPAFGKGHQNAYALPSNYQPPLKGCGAPQKYPPTPASEYE 333

  Fly   639 --VLVRNGKPCLGDSSKLGADCVSVSSATATAMQNAAAHHLVALNGAAAY-----QHAAAAAAGL 696
              ||..|| ...|..:..|:.........|..:...|...|..||..:.:     .:..||..|.
Mouse   334 PHVLQANG-GAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGAAPMGP 397

  Fly   697 HAHAHAHAHAHGHGHPH 713
            :.|       ||...||
Mouse   398 NQH-------HGPCDPH 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 25/55 (45%)
Hoxb3NP_034588.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 63..124 11/60 (18%)
Antp-type hexapeptide 129..134 0/4 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 136..195 16/67 (24%)
Homeodomain 192..248 CDD:459649 25/55 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 249..276 5/26 (19%)
DUF4074 369..431 CDD:463833 12/46 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 389..433 8/26 (31%)

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