DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vnd and Hoxa4

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_032291.1 Gene:Hoxa4 / 15401 MGIID:96176 Length:285 Species:Mus musculus


Alignment Length:390 Identity:82/390 - (21%)
Similarity:115/390 - (29%) Gaps:151/390 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   267 HNGSGTGGGAGEADHHSTTEHHAPPSHPQQQHPHHQQHHHPHLLLPQQHHQQAVAPLPLAHHQSG 331
            |.|.|.|.||....          |.:|:.|..       |||..|..|    .|..|.|::...
Mouse    26 HGGPGGGDGAVGGG----------PGYPRPQSA-------PHLPAPNPH----AARQPPAYYAPR 69

  Fly   332 EAQSHAHANAAAAHLLASHNAAAAAAVAAGQYLPNLPKNFPGSFGDEMSSYHHMAQTMLQHSGRS 396
            ..:.........|...|...|...|:.|..:..|     .||:         |.:.         
Mouse    70 AREPSYPGGLYPAPAAACPYACRGASPARPEQSP-----APGA---------HPSP--------- 111

  Fly   397 AWIKENELYGTQQPASPD--STSPVTSEVSYTYIGSNCQTSPALSGDYKSYSRSADSDALSVGDA 459
                     ..|.||.|.  :..|.|..|:   .|.:....|.|..|.              |.|
Mouse   112 ---------APQPPAPPRHCAPGPTTPAVA---TGGSAPACPLLLADQ--------------GPA 150

  Fly   460 LHTLHGSSGNGSAGGAPTAH----ALHNNNNNTTNNNNHSLKAEGINGAGSGHDDSLNEDGIEED 520
                      |..|..|..:    .:|.:..|::.|                             
Mouse   151 ----------GPKGKEPVVYPWMKKIHVSAVNSSYN----------------------------- 176

  Fly   521 IDDVDDADGSGGGDANGSDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLT 585
                       ||:          .::.|..:|:.|..|||:.|...|||:...|..:|..:.|:
Mouse   177 -----------GGE----------PKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLS 220

  Fly   586 PTQVKIWFQNHRYKTKR-----------AQNEKGYEGHPGLLHGHATHPH-HP---SALPSPRRV 635
            ..||||||||.|.|.|:           :.......|.||....|:.||| ||   ::.|.|..:
Mouse   221 ERQVKIWFQNRRMKWKKDHKLPNTKMRSSNTASAPAGPPGKAQTHSPHPHPHPLPGASTPIPSSI 285

  Fly   636  635
            Mouse   286  285

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 23/55 (42%)
Hoxa4NP_032291.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..70 17/64 (27%)
PHA03247 <43..161 CDD:223021 35/187 (19%)
Antp-type hexapeptide 159..164 0/4 (0%)
Homeodomain 181..237 CDD:459649 23/55 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 238..285 11/46 (24%)

Return to query results.
Submit another query.