DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and Hoxa1

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_034579.3 Gene:Hoxa1 / 15394 MGIID:96170 Length:336 Species:Mus musculus


Alignment Length:415 Identity:97/415 - (23%)
Similarity:132/415 - (31%) Gaps:157/415 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 GSGTGG----GAGEADHHSTTEHHAPPS--------------HPQQQHPHHQQHHHPHLLLPQQH 315
            |||..|    .|..:||..||......|              ..|...|||..|||.|      |
Mouse    16 GSGDSGTCSARAYPSDHGITTFQSCAVSANSCGGDDRFLVGRGVQISSPHHHHHHHHH------H 74

  Fly   316 HQQAVAPLPLAHHQSGE-AQSHAHANAAAAHLLASHNAAA--------AAAVAAGQYLPNLPKNF 371
            |.|..     .:..||. ..|::|::...::  .:.|.:|        ..|..:|.|.|..|..:
Mouse    75 HPQTA-----TYQTSGNLGISYSHSSCGPSY--GAQNFSAPYGPYGLNQEADVSGGYPPCAPAVY 132

  Fly   372 PGSFGDEMSSYHHMAQTMLQHSGRSAWIKENELYGTQQPASPDSTSPVTSEVSYTYIGSNCQTSP 436
            .|:....|..:||      .|.|          |......||.            ||        
Mouse   133 SGNLSTPMVQHHH------HHQG----------YAGGTVGSPQ------------YI-------- 161

  Fly   437 ALSGDYKSYSRSADSDALSV-GDALHTLHGSSGNGSAGGAPTAHALHNNNNNTTNNNNHSLKAEG 500
                 :.||.:...:.||:. .::|..||.|                                  
Mouse   162 -----HHSYGQEQQTLALATYNNSLSPLHAS---------------------------------- 187

  Fly   501 INGAGSGHDDSLNEDGIE-----EDIDDVD---DADGSGGGDANGSDGLPNKKRKRRVLFTKAQT 557
                   |.::......|     :..|.:.   :...:|.....|..|.||..|..   ||..|.
Mouse   188 -------HQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYVGQPNAVRTN---FTTKQL 242

  Fly   558 YELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLH-GHAT 621
            .|||:.|...:||:...|..:|:.::|..|||||||||.|.|.|:.:.|       |||. ..||
Mouse   243 TELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKE-------GLLPISPAT 300

  Fly   622 HP--------------HHPSALPSP 632
            .|              ..||| |||
Mouse   301 PPGSDEKTEESSEKSSPSPSA-PSP 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 24/55 (44%)
Hoxa1NP_034579.3 COG5576 177..>287 CDD:227863 36/153 (24%)
Homeodomain 234..287 CDD:459649 24/55 (44%)

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