DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and Hmx1

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_034575.1 Gene:Hmx1 / 15371 MGIID:107178 Length:332 Species:Mus musculus


Alignment Length:172 Identity:56/172 - (32%)
Similarity:77/172 - (44%) Gaps:47/172 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   533 GDANGSDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 597
            |:|.|     .:::|.|.:|:::|.::||..|..:||||:.||..||:.::||.|||||||||.|
Mouse   184 GEARG-----GRRKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRR 243

  Fly   598 YKTKR---AQNEKGYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKPCLGDSSKLGADCV 659
            .|.||   |:.|......||                :.|.|.||||.....|             
Mouse   244 NKWKRQLAAELEAASLSPPG----------------AQRLVRVPVLYHESPP------------- 279

  Fly   660 SVSSATATAM-------QNAAAHHLVALNGAAAYQHAAAAAA 694
               :|...|:       ..|....|:..:||.||..||..||
Mouse   280 ---AAAGPALPFPLAPPAPAPPPPLLGFSGALAYPLAAFPAA 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 28/55 (51%)
Hmx1NP_034575.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..170
Homeodomain 192..248 CDD:459649 28/55 (51%)
HMX family specific domain 1 251..261 2/9 (22%)
HMX family specific domain 2 264..277 6/12 (50%)
Blue background indicates that the domain is not in the aligned region.

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