Protein Alignment vnd and Cdx4

DIOPT Version :10

• Sequence 1: NP_476786.2
• Gene: vnd / 31003
• FlyBaseID: FBgn0261930
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: NP_031700.1
• Gene: Cdx4 / 12592
• MGIID: 88362
• Length: 282
• Species: Mus musculus
• Alignment Length: 328
• Identity: 75/328 - (22%)
• Similarity: 103/328 - (31%)
• Gaps: 109/328 - (33%)

  Fly   349 SHNAAAAAAVAAGQYLPNLPKNF------PGSFGDEMSSYHHMAQTMLQHSGRSAWIKENELYGT 407
            |..|....:..:|..||  ..||      |...|     |.||:..........||
Mouse    24 SSTAGVGTSGGSGSPLP--ASNFTAAPVYPHYVG-----YPHMSNMDPHGPSLGAW--------- 72

  Fly   408 QQPASPD----STSPVTSEVSYTYIGSNCQTSPAL-SGDYKSYSRSADSDALSVGDALHTLHGSS 467
            ..|.||.    ||.|.......| :..|..|||.. |.||.                  ||..:|
Mouse    73 SSPYSPPREDWSTYPGPPSTMGT-VPMNDMTSPVFGSPDYS------------------TLGPTS 118

  Fly   468 GNGSAGGAPTAHALHNNNNNTTNNNNHSLKAEGINGAGSGHDDSLNEDGIEEDIDDVDDADGSGG 532
            |..:.|..|                                      |...|.:..:|  .|:.|
Mouse   119 GASNGGSLP--------------------------------------DAASESLVSLD--SGTSG 143

  Fly   533 GDANGSD---------------GLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLI 582
            ..:....               |....|.|.||::|..|..|||:.|...||::...:..||..:
Mouse   144 ATSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIRRKSELAVNL 208

  Fly   583 RLTPTQVKIWFQNHRYKTKRAQNEK--GYEGHPGLLH---GHATHPHHPSAL---PSPRRVAVPV 639
            .|:..||||||||.|.|.::...:|  .:|...|.:.   |..:....|:|.   ||..|...|:
Mouse   209 GLSERQVKIWFQNRRAKERKMIKKKISQFENTGGSVQSDSGSISPGELPNAFFTTPSAVRGFQPI 273

  Fly   640 LVR 642
            .::
Mouse   274 EIQ 276

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vnd	NP_476786.2	Homeodomain	546..602	CDD:459649	24/55 (44%)
Cdx4	NP_031700.1	Caudal_act	13..168	CDD:461413	40/218 (18%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	13..36		2/11 (18%)
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	98..156		18/115 (16%)
		Homeodomain	173..228	CDD:459649	24/54 (44%)