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Protein Alignment vnd and CDX4

DIOPT Version :10

Sequence 1:	NP_476786.2	Gene:	vnd / 31003	FlyBaseID:	FBgn0261930	Length:	723	Species:	Drosophila melanogaster
Sequence 2:	NP_005184.1	Gene:	CDX4 / 1046	HGNCID:	1808	Length:	284	Species:	Homo sapiens

Alignment Length:	312	Identity:	74/312 - (23%)
Similarity:	111/312 - (35%)	Gaps:	88/312 - (28%)

- Green bases have known domain annotations that are detailed below.

  Fly   347 LASHNAAAAAAVAAGQYLPNLPKNFP-----GSFGDEMSSYHHMAQTMLQHSGRSAWIKENELYG 406
            :.:.|.|||.|.:.....|::|...|     |.:|...|            ..|..|    .:|
Human    39 MPASNFAAAPAFSHYMGYPHMPSMDPHWPSLGVWGSPYS------------PPREDW----SVY- 86

  Fly   407 TQQPASPDSTSPVTSEVSYTYIGSNCQTSPA--LSGDYKSYSRSADSDALSVGDALHTLHGSSGN 469
             ..|:|...|.||....|          |||  .|.||.           ::|.......|||..
Human    87 -PGPSSTMGTVPVNDVTS----------SPAAFCSTDYS-----------NLGPVGGGTSGSSLP 129

  Fly   470 GSAGGA--PT-AHALHNNNNNTTNNNNHSLKAEGINGAGSGHDDSLNEDGIEEDIDDVDDADGSG 531
            |.|||:  || |.|...::.:.:.::.::...:.:...|.
Human   130 GQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGK------------------------- 169

  Fly   532 GGDANGSDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNH 596
                      ...|.|.||::|..|..|||:.|...||::...:..||..:.|:..||||||||.
Human   170 ----------TRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNR 224

  Fly   597 RYKTKRAQNEK--GYEGHPGLLHGHATHPHHPSALPSPRRVAVPVLVRNGKP 646
            |.|.::...:|  .:|...|.:... :....|..||: .....|..||..:|
Human   225 RAKERKMIKKKISQFENSGGSVQSD-SDSISPGELPN-TFFTTPSAVRGFQP 274

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.