Protein Alignment vnd and hoxc10a

DIOPT Version :10

• Sequence 1: NP_476786.2
• Gene: vnd / 31003
• FlyBaseID: FBgn0261930
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: XP_017208987.1
• Gene: hoxc10a / 100535576
• ZFINID: ZDB-GENE-990415-110
• Length: 337
• Species: Danio rerio
• Alignment Length: 317
• Identity: 80/317 - (25%)
• Similarity: 110/317 - (34%)
• Gaps: 82/317 - (25%)

  Fly   360 AGQYLPNLPK---NFPGSFG----------DEMSSYHHMAQTMLQH--SGRSAWIKENELYGTQQ 409
            :|.|:....:   :..||||          |...|..|:......|  |.|..||..::.|...|
Zfish    33 SGMYMQTSAEYGCSMMGSFGIVGTPLSKRDDLQPSGMHLGSYQHSHYLSQRDTWIAGSKTYRGSQ 97

  Fly   410 PAS-----------------------PDSTSPVTSEVSYTYI-----GSNCQTSPALSGDYKSYS 446
            |.:                       ||..|...|....|||     .|:...|...:.||...|
Zfish    98 PVAQPLHPCSFPASNVKEEAIPCLYQPDIDSAKESGEKSTYIRLGDNNSHPNQSAVSTPDYFRRS 162

  Fly   447 RSADSDALSVGDALHTLHGSSGNGSAGGAPTAHAL---------------HNNNNNTTNNN---N 493
            :...|:....||..    ||..|.....:....||               .:...||..::   .
Zfish   163 QVYASERGHHGDEF----GSDFNPIPRISTPVEALASDSCVKSSKARQHPEDKGGNTQEDDMDQR 223

  Fly   494 HSLKAEGINGAGSGHDDSLNEDGIEEDIDDVDDADGSGGGDANGSDGLPNKKRKRRVLFTKAQTY 558
            .:.|.|.::...|..|||      |.::.|....:.:.|.......|     ||:|..:||.||.
Zfish   224 QTRKEESVSKTESCTDDS------ESELKDESKLEKATGNWLKAKSG-----RKKRCPYTKHQTL 277

  Fly   559 ELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK------GY 609
            |||:.|....||:...|..::..|.||..||||||||.|.|.|:...|.      ||
Zfish   278 ELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLKKLNRESRVRELTGY 334

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vnd	NP_476786.2	Homeodomain	546..602	CDD:459649	27/55 (49%)
hoxc10a	XP_017208987.1	Homeodomain	265..321	CDD:459649	27/55 (49%)