DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and nkx1-1

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:XP_002936812.1 Gene:nkx1-1 / 100493120 XenbaseID:XB-GENE-488879 Length:408 Species:Xenopus tropicalis


Alignment Length:425 Identity:101/425 - (23%)
Similarity:150/425 - (35%) Gaps:130/425 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 SHPQQQ----------HPHHQQHHHPHLLLPQQHHQQAVAPLPLAHHQSGEAQSHAHANAAAAHL 346
            ||.:|:          .|..:|..||:...|........|||.:          |...:.:...:
 Frog    37 SHGEQRLTASDLPAYGCPRDRQGDHPNCNAPAGPESLGAAPLAV----------HRTTSFSVLDI 91

  Fly   347 LASHNAAAAAAVAAGQYLPNLPKNFPGSF---GDEMSSYHHMAQTMLQHSGRSAWIKENELYGTQ 408
            |..:...:.....:|.|.|      ||.:   |:|.:....:|      :|:.|:::|.|     
 Frog    92 LDPNKFNSKQRHCSGAYKP------PGDYILRGEEKAEGPDIA------TGQKAFLEEYE----- 139

  Fly   409 QPASPDSTSPVTSEVSYTYIGS-NCQT---SPALSGDYKSYSRSADSDALSVGDALHTLHGSSGN 469
              :...||..:..|..|.:..: :|||   ||:...|.:......:.:.:.              
 Frog   140 --SCKKSTEVIKEEGLYQHSATEDCQTQEFSPSPGSDLEEEEDEEEDEEIC-------------- 188

  Fly   470 GSAGGAPTAHALHNNNNNTTNNNNHSLKAEGINGAGSGH-DDSLNED---GIEED-----IDDVD 525
                            :..::|:..|..||...|||:|. :|:||..   |..:.     .....
 Frog   189 ----------------SEESSNSTPSGLAERDPGAGNGQGEDALNTGAPAGSNQQQPTGKNQQQQ 237

  Fly   526 DADGSGGGDANGSDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 590
            :..|.......|||....|.|:.|..||..|...||.:|:..||||..||.:||..:.||.||||
 Frog   238 NQHGKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKSTRYLSVCERLNLALSLSLTETQVK 302

  Fly   591 IWFQNHRYKTKRAQN-------EKGYEGH------------------------PGLLHGHATHPH 624
            |||||.|.|.|: ||       ..|..||                        |..||||..:|.
 Frog   303 IWFQNRRTKWKK-QNPGADTSAPTGGSGHGGGGSGSVLGGGLSPLSHSPPMGNPMALHGHHGYPS 366

  Fly   625 HPSA----------LPSPRRVAVPVLVRN---GKP 646
            |...          ||.|..|..|.::.:   |.|
 Frog   367 HAPGGLMCTAQLPFLPGPAAVLSPFVLSSQSYGAP 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 29/55 (53%)
nkx1-1XP_002936812.1 Homeodomain 258..314 CDD:459649 29/55 (53%)

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