DRSC/TRiP Functional Genomics Resources

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Protein Alignment vnd and hoxa3

DIOPT Version :10

Sequence 1:NP_476786.2 Gene:vnd / 31003 FlyBaseID:FBgn0261930 Length:723 Species:Drosophila melanogaster
Sequence 2:NP_001120901.1 Gene:hoxa3 / 100151729 XenbaseID:XB-GENE-482267 Length:406 Species:Xenopus tropicalis


Alignment Length:420 Identity:92/420 - (21%)
Similarity:139/420 - (33%) Gaps:117/420 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   395 RSAWIKENELYGTQQPASPDSTSPVTSEVSYTYIGSNCQTSPALSGDYKSYSRSADSDALSVGDA 459
            ::.:...:.:||..         |......:||..|..|..|:.|.....|.|.|.| ..|.|.|
 Frog     3 KATYYDSSAIYGGY---------PYQGANGFTYNASQQQYPPSSSLLETEYHRPACS-LQSPGSA 57

  Fly   460 -------------LHTLHGSSGNGSA---------GGAPTAHALHNNNNNTTNNNNHSLKAEGIN 502
                         :.|::..|.....         |..|:.......:|..|.::|   ||..|.
 Frog    58 VPHHKANDINESCMRTINSQSNQAPVIPEQQPTPQGPPPSVSPPQTTSNAATASSN---KATSIT 119

  Fly   503 GAGSGHDDSLNED---GIEEDIDDV--DDADGSGGGDANGSDGLP---NKKRKRRVLFTKAQTYE 559
                  ..::::.   .::|...:.  ..|..|..|::...|..|   :..::.|..:|.||..|
 Frog   120 ------SPTMSKQIFPWMKESRQNTKQQKAGSSSSGESCAGDKSPPGQSSSKRARTAYTSAQLVE 178

  Fly   560 LERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK----------------- 607
            ||:.|...|||..|.|..:|:|:.||..|:||||||.|.|.|:.|..|                 
 Frog   179 LEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKSMMTSSGGQSPCRSPVP 243

  Fly   608 --GYEGHPGLLHG------------HATHPHHPSA------LPSPRRVAVPVLVR---------- 642
              ...|:...:|.            .|.:.|||||      .|||.....|...|          
 Frog   244 TPSVGGYLNSMHSLVNSVPYEPQSPPAFNKHHPSAYGVPAPYPSPHNSCPPHQKRYSGTAAVTPE 308

  Fly   643 ------------NGKPCL-GDSSKLGADCVSVSSATATAMQNAAAHHLVALNGAAAYQHAAAAAA 694
                        .|.|.: |....:|.:.|...:.:..:|...:  ||...:....|..|....:
 Frog   309 YEPHPLQQSSGAYGNPHVQGSPVYVGGNYVETMTNSGPSMFGLS--HLSHSSSNMDYSGAGPMNS 371

  Fly   695 GLHAHAHAHAH-----AHGHGHPHAHAQRA 719
            | |.|....:|     ...|.:|....|.|
 Frog   372 G-HHHGPCDSHPTYTDLSAHHNPQGRIQEA 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vndNP_476786.2 Homeodomain 546..602 CDD:459649 26/55 (47%)
hoxa3NP_001120901.1 Homeodomain 165..221 CDD:459649 26/55 (47%)
DUF4074 343..404 CDD:463833 13/61 (21%)

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