Protein Alignment vnd and hoxd3

DIOPT Version :10

• Sequence 1: NP_476786.2
• Gene: vnd / 31003
• FlyBaseID: FBgn0261930
• Length: 723
• Species: Drosophila melanogaster
• Sequence 2: XP_002935734.1
• Gene: hoxd3 / 100038058
• XenbaseID: XB-GENE-478462
• Length: 415
• Species: Xenopus tropicalis
• Alignment Length: 321
• Identity: 85/321 - (26%)
• Similarity: 133/321 - (41%)
• Gaps: 68/321 - (21%)

  Fly   395 RSAWIKENELYGTQQPASPDSTSPVTSEVSYTYIGSNCQTSP--ALSGDYKSYSRSADSDALSV- 456
            ::|:.:.:.|:|....|.|:         ||:| |.:.|..|  :|..||.|.:.|....|:..
 Frog    19 KTAYYENSGLFGGYTYAKPE---------SYSY-GPSQQQYPQSSLDSDYPSTACSIQPAAIRAP 73

  Fly   457 --------GDALHTLHGSSGNGSAGGAPTAHALHNNNNNTTNNNNHSL--KAEGINGAGSGHDDS 511
                    |..:.|....:.|.:...:...|...:...::.::.|.|.  |::..|.:||. ..:
 Frog    74 NHKANDISGSCMRTTSSQNSNQAPSISNQQHQAPSLPPSSPSHGNSSAQKKSKSSNSSGSS-QAT 137

  Fly   512 LNED---GIEEDIDDVDDADGSGGGDANGSDGL-------PNKKRKRRVLFTKAQTYELERRFRQ 566
            |::.   .::|...:....:.|........:..       |:.||. |..:|.||..|||:.|..
 Frog   138 LSKQIFPWMKESRQNAKQKNTSSSSSTPPGENCEEKSPTGPSSKRV-RTAYTSAQLVELEKEFHF 201

  Fly   567 QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLHGHATHPHHPSALPS 631
            .|||..|.|..:|:|:.||..|:||||||.|.|.|:.|..|      |::|..|..        |
 Frog   202 NRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAK------GIMHSPAGQ--------S 252

  Fly   632 PRRVAVPVLVRNGKPCLGDSSK------LGADCVSVSSATATAMQNAAAHHLVALNGAAAY 686
            |.|  .|.|  :|...:|.||:      |..|..|.:| .|.:.||        :.|.|||
 Frog   253 PDR--SPTL--SGSNHVGYSSQLPTVNSLSYDAPSPTS-FAKSQQN--------MYGLAAY 300

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vnd	NP_476786.2	Homeodomain	546..602	CDD:459649	27/55 (49%)
hoxd3	XP_002935734.1	Homeodomain	181..237	CDD:459649	28/56 (50%)
		DUF4074	352..413	CDD:463833